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35 Open 61 Closed
35 Open 61 Closed
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Issues list

Neuron reconstruction team to use this version of neuron_morphology to quality control swc and marker files before uploading enhancement New feature or request
#219 opened Jun 8, 2023 by MatthewMallory
@MatthewMallory
Soma features extraction failing due to no morphology attribute
#203 opened May 7, 2022 by anukratinigam
make release of neuron morphology
#196 opened Jun 30, 2021 by gnayuy
3 tasks
1
Compute features outside visual areas Epic
#194 opened Mar 16, 2021 by wbwakeman
circleci failures: Unable to open file, etc bug Something isn't working
#193 opened Mar 1, 2021 by tmchartrand
snap_polygons FromLimsSource functionality broken bug Something isn't working
#190 opened Feb 26, 2021 by tmchartrand
1
use snap_polygons without pia/wm paths enhancement New feature or request
#189 opened Feb 26, 2021 by tmchartrand
4
enable absolute depth measurements by saving path length enhancement New feature or request
#188 opened Feb 26, 2021 by tmchartrand
Fix breaking neuron_morphology issues
#186 opened Oct 27, 2020 by wbwakeman
EM transform and features
#184 opened Aug 21, 2020 by wbwakeman
Create static image of neuron reconstruction
#183 opened Aug 20, 2020 by wbwakeman
ZeroDivisionError on fMOST registered reconstructions
#182 opened Aug 18, 2020 by wbwakeman
Create static image of neurite cortical layer histogram
#181 opened Aug 17, 2020 by wbwakeman
2 tasks
Create named profile for AWS credentials file for neuron_morphology
#180 opened Aug 5, 2020 by wbwakeman
1 task
Make parent-daughter ratio NaN-safe
#179 opened Jul 22, 2020 by wbwakeman
1 task
Investigate features affected by reconstruction node sampling differences
#178 opened Jul 22, 2020 by wbwakeman
2 tasks
Neuron Morphology Pipeline status tracking Epic
#171 opened Jun 29, 2020 by NileGraddis
2
Test Tilt from Axon/Apical Dendrite Trunk
#167 opened Jun 11, 2020 by MatthewAitken
Create design document for feature extraction pipeline
#156 opened May 27, 2020 by wbwakeman
calculate_number_of_stems() fails to use its parameter node_types bug Something isn't working
#130 opened May 4, 2020 by gouwens
Error loading swc file with trailing whitespace on each line bug Something isn't working
#122 opened Apr 16, 2020 by MatthewMallory
Help users run neuron morphology validation on their local computers
#110 opened Apr 8, 2020 by wbwakeman
update validation criteria
#109 opened Apr 8, 2020 by wbwakeman
Validate neuron morphology validation criteria
#108 opened Apr 8, 2020 by wbwakeman
Update LIMS to use new morphology validation
#107 opened Apr 8, 2020 by wbwakeman
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