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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 343 149

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 22 14

Repositories

Showing 10 of 392 repositories
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES’s past year of commit activity
    IGOR Pro 23 7 287 9 Updated Oct 25, 2024
  • npc_lims Public

    Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.

    AllenInstitute/npc_lims’s past year of commit activity
    Python 0 MIT 0 6 1 Updated Oct 25, 2024
  • npc_sessions_cache Public

    Scripts, notebooks and plots that operate on NWB or NWB-like objects from `npc_sessions` in the cloud.

    AllenInstitute/npc_sessions_cache’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 25, 2024
  • microns_tutorial Public

    MICrONS databook and analysis tutorials

    AllenInstitute/microns_tutorial’s past year of commit activity
    Jupyter Notebook 1 2 0 0 Updated Oct 25, 2024
  • abc_atlas_access Public

    Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas

    AllenInstitute/abc_atlas_access’s past year of commit activity
    Jupyter Notebook 50 21 14 5 Updated Oct 25, 2024
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder’s past year of commit activity
    TypeScript 3 BSD-3-Clause 1 46 5 Updated Oct 25, 2024
  • patchseq_autotrace Public

    Execution of patchseq slice autotrace pipeline

    AllenInstitute/patchseq_autotrace’s past year of commit activity
    Python 0 0 0 0 Updated Oct 24, 2024
  • dynamic_routing_analysis Public

    Tools for accessing, processing and presenting data from Dynamic Routing experiments.

    AllenInstitute/dynamic_routing_analysis’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Oct 24, 2024
  • Extract_Somatic_Features Public

    A pipeline to extract soma and nucleus features from the segmentation of precomputed EM datasets.

    AllenInstitute/Extract_Somatic_Features’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 24, 2024
  • cell_type_mapper Public

    Repository for storing prototype functionality implementations for the BKP

    AllenInstitute/cell_type_mapper’s past year of commit activity
    Python 18 4 3 2 Updated Oct 24, 2024