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* Remove extra whitespace from line ends * Allow vertical surfaces to be found between any or multiple layers, rather than next consecutive layer in list * Migrate outputs to persistent storage & database them (#153) * #141 initial * #141 configs as string * #141 source posting lambda * #141 (wip) start using dynamic params artifact * #141 (wip) parameters artifact * #141 (wip) fix params artifact lambda * #141 (wip) use sh-style sourcing * #141 (wip) trust just-written params file * #141 (wip) remove old parameter setting * #141 (wip) posix facts * #141 (wip) missing file * #141 (wip) typo * #141 (wip) checking * #141 (wip) get params into build env before using them :P * #141 (wip) debugging unrecognized params * #141 (wip) config syntax * #141 (wip) capability syntax, reference typo * #141 (wip) build lambda for migration * #141 (wip) update cfn pipeline to add deploy package info * #141 (wip) hopefully get outputs in place * #141 (wip) persistent ci outputs also conditional * #141 (wip) missing comma * #141 (wip) output migration * #141 (wip) dynamo env vars to lamdba * #141 (wip) dont use nested attributes * #141 add a script for downloading latest reconstructions * #141 rely on lifecycle rule to clear out landing buckets (reruns are easier, since you can download -> upload) * GH-141 record raw swc key (not using in intermediate stages right now to avoid breakage before release) * #151 add backoff to landing stage * #151 add backoff to all ecs tasks * GH-151 if no slice transform provided, default it to None * #151 retry in an additional error case (ECS.InvalidParameterException resulting from ec2 rate limits) * Feature adaptive scale (#121) * Remove extra whitespace at line ends * Improve performance of intersection search by adaptive scale * trigger ci Co-authored-by: Matt Aitken <matthewaitken2@gmail.com> * Remove trailing whitespace * Fix number of stems with node_types * Fix stem exit features * Add tests for stem features * Add additional stem for test * Fix bugs with number of branches and max branch order * Add tests for num_branches and max_branch_order * Remove trailing whitespace * Fix contraction bug with node_types specified * Fix max path length bugs * Add tests for contraction and path length * Modify early_branch_path to use new _calculate_max_path_distance * GH-160 merges stem exit test files Moves new stem exit and distance test from @gouwens into the existing test file. Uses MorphologyBuilder to construct the morphology. Updates the existing test to account for new rootwise output list. * GH-160 migrate new number of stems test * GH-161 colocate intrinsic feature tests * GH-161 max branch order cleanup * GH-162 GH-163 colocate path features tests * modifies snap polygons to work on the entire June 2020 release set checkpoint bit of refactoring bit of refactoring documentation, tweaks for cortical surface trimming provide mp resolver to get snapped polys test * adds tests and documentation for snap polygons update tests for remove_duplicates tests for find transition tests for first_met remaining cortex surface tests additional geometries testing more docs, minor tweaks, schema params linting, typing, docs snap polygons integration tests * updates argschema to 3.0a candidate branch (#166) * updates argschema to 3.0a candidate branch * changes argschema requirement to pypi package * uses specific pypi argschema prerelease * removes test_mac release requirement and WIP from readme (#172) * update version to 1.0.0 * GH-174 switch to autoapi * adds optional reconstruction_ids argument and downloads raw and marke… (#173) * adds optional reconstruction_ids argument and downloads raw and marker files as well * uses specimen_ids instead of reconstruction_ids in filenames * updates help messages * moves ccf reference into new persistent reference bucket (#176) moves ccf reference into new persistent reference bucket * Update version to 1.0.1 * Bugfix/1.0.1 failing tests (#198) * set default filemode to "w" for feature_writer * add location constraint to s3 mock bucket Co-authored-by: Nathan Gouwens <nathang@alleninstitute.org> Co-authored-by: NileGraddis <NileGraddis@Gmail.com>
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Original file line number | Diff line number | Diff line change |
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@@ -1 +1 @@ | ||
1.0.0.beta0 | ||
1.0.1 |
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