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allow download of archived vcf files; add transformation management t…
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…ool; add dihaploid_induction as a new cross_type; fix issue with BrAPI observation values of 0; fix genotype download issue without protocol; fix download from project detail page; other improvements.
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@lukasmueller
lukasmueller committed Mar 22, 2024
1 parent 95755c3 commit 3e46b98
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion cxgn/sgn
Submodule sgn updated 50 files
+102 −0 db/00184/AddTransformationRelatedCvterms.pm
+7 −0 js/source/legacy/CXGN/BreedersToolbox/Crosses.js
+23 −0 js/source/legacy/CXGN/TrialTreeFolders.js
+3 −2 js/source/modules/wizard-downloads.js
+1 −0 lib/Bio/GeneticRelationships/Pedigree.pm
+1 −2 lib/CXGN/BrAPI/v2/Observations.pm
+19 −4 lib/CXGN/BreedersToolbox/Projects.pm
+1 −1 lib/CXGN/Pedigree/AddCrosses.pm
+3 −3 lib/CXGN/Pedigree/AddPedigrees.pm
+1 −0 lib/CXGN/Pedigree/ParseUpload/Plugin/CrossesExcelFormat.pm
+21 −8 lib/CXGN/Pedigree/ParseUpload/Plugin/CrossesSimpleExcel.pm
+1 −0 lib/CXGN/Pedigree/ParseUpload/Plugin/CrossesSimplifiedParentInfoExcel.pm
+172 −0 lib/CXGN/Transformation/AddTransformant.pm
+185 −0 lib/CXGN/Transformation/AddTransformationIdentifier.pm
+114 −0 lib/CXGN/Transformation/AddTransformationProject.pm
+144 −0 lib/CXGN/Transformation/Transformation.pm
+5 −0 lib/CXGN/Trial/Folder.pm
+1 −1 lib/CXGN/Trial/TrialLayoutSearch.pm
+182 −0 lib/SGN/Controller/AJAX/Search/GenotypingDataProject.pm
+66 −0 lib/SGN/Controller/AJAX/Stock.pm
+276 −0 lib/SGN/Controller/AJAX/Transformation.pm
+46 −0 lib/SGN/Controller/BreedersToolbox.pm
+17 −3 lib/SGN/Controller/BreedersToolbox/Download.pm
+16 −0 lib/SGN/Controller/BreedersToolbox/Trial.pm
+2 −2 lib/SGN/Controller/Cross.pm
+57 −0 lib/SGN/Controller/Transformation.pm
+81 −1 mason/breeders_toolbox/breeder_search_page.mas
+18 −10 mason/breeders_toolbox/cross/add_cross_dialogs.mas
+5 −2 mason/breeders_toolbox/cross/upload_crosses_dialogs.mas
+2 −0 mason/breeders_toolbox/genotype_data_project.mas
+54 −0 mason/breeders_toolbox/genotyping_data_project/genotype_archived_vcf.mas
+12 −0 mason/page/detail_page_2_col_section.mas
+1 −0 mason/pedigree/stock_pedigree.mas
+1 −0 mason/site/toolbar/manage.mas
+1 −0 mason/site/toolbar/search_menu.mas
+130 −0 mason/transformation/add_transformant_names_dialog.mas
+165 −0 mason/transformation/add_transformation_identifier_dialog.mas
+209 −0 mason/transformation/add_transformation_project_dialog.mas
+133 −0 mason/transformation/edit_transformation_project_details.mas
+34 −0 mason/transformation/manage_transformation.mas
+101 −0 mason/transformation/transformation.mas
+47 −0 mason/transformation/transformation_project.mas
+133 −0 mason/transformation/transformation_project_details.mas
+132 −0 mason/transformation/transformation_project_tree.mas
+36 −0 mason/transformation/transformations_in_project.mas
+8 −0 system_cvterms.txt
+7 −6 t/unit_fixture/CXGN/Trial.t
+31 −0 t/unit_fixture/CXGN/Uploading/VCFGenotypes.t
+130 −0 t/unit_mech/AJAX/Transformation.t
+2 −2 t/unit_mech/AJAX/_BrAPI_v1.t

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