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Fixes #2651 NTR diffuse bipolar 5 cell #2664

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Fixes #2651 NTR diffuse bipolar 5 cell #2664

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e5951b0
Fixes #2651 NTR diffuse bipolar 5 cell
aleixpuigb Oct 16, 2024
5b6712a
Merge branch 'master' into 2651_NTR_DB5
aleixpuigb Oct 17, 2024
634317f
Merge branch 'master' into 2651_NTR_DB5
AvolaAmg Oct 18, 2024
a207081
Merge branch 'master' into 2651_NTR_DB5
aleixpuigb Oct 22, 2024
4e66c7d
Clarify definition marker and add present in taxon
aleixpuigb Oct 22, 2024
0de9daa
Merge branch 'master' into 2651_NTR_DB5
aleixpuigb Oct 22, 2024
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12 changes: 12 additions & 0 deletions src/ontology/cl-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -3038,6 +3038,7 @@ Declaration(Class(obo:CL_4033066))
Declaration(Class(obo:CL_4033067))
Declaration(Class(obo:CL_4033083))
Declaration(Class(obo:CL_4033084))
Declaration(Class(obo:CL_4033085))
Declaration(Class(obo:CL_4040000))
Declaration(Class(obo:CL_4040001))
Declaration(Class(obo:CL_4040002))
Expand Down Expand Up @@ -32140,6 +32141,17 @@ SubClassOf(obo:CL_4033084 obo:CL_0000501)
SubClassOf(obo:CL_4033084 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001305))
SubClassOf(obo:CL_4033084 ObjectSomeValuesFrom(obo:RO_0002207 obo:CL_4033083))

# Class: obo:CL_4033085 (diffuse bipolar 5 cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:27833534") Annotation(oboInOwl:hasDbXref "PMID:32032773") obo:IAO_0000115 obo:CL_4033085 "An ON diffuse bipolar cell that stratifies in the stratum 3 of the inner plexiform layer to make synapses with ON parasol ganglion cells. A diffuse bipolar 5 cell has high expression of MYO16 compared with other bipolar cells.")
AnnotationAssertion(obo:RO_0002175 obo:CL_4033085 obo:NCBITaxon_9443)
AnnotationAssertion(terms:contributor obo:CL_4033085 <https://orcid.org/0000-0001-6677-8489>)
AnnotationAssertion(terms:date obo:CL_4033085 "2024-10-16T12:46:53Z"^^xsd:dateTime)
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PMID: 29114208
This reference might have some extra synonyms such as Type 5, T5 but unsure if you want to associate to diffuse bipolar cells, these are referred to as bipolar cells.
also it subdivide them further into type 5 inner (5i), outer (5o) and thick (5t) types.
just a suggestion.

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Thank you for the suggestion. These synonyms are for the mouse type 5 bipolar cell, and the subclasses are orthologs of DB5, DB4a and DB4b. However, I will look into adding them in a separate ticket.

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:32032773") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4033085 "DB5 cell")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:27833534") rdfs:comment obo:CL_4033085 "A diffuse bipolar 5 cell typically contacts 7–8 cone photoreceptors. The number and thickness of its dendritic processes are intermediate between those of a diffuse bipolar 6 cell (less dense and thinner) and a diffuse bipolar 4 cell (denser and thicker).")
AnnotationAssertion(rdfs:label obo:CL_4033085 "diffuse bipolar 5 cell")
SubClassOf(obo:CL_4033085 obo:CL_0000749)

# Class: obo:CL_4040000 (glial restricted tripotential precursor cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:10719353") obo:IAO_0000115 obo:CL_4040000 "A glial precursor cell that generates oligodendrocytes and type-1 and type-2 astrocytes. It has been shown in some mammals that this cell type may express A2B5, nestin, FGFR-1, FGFR-2, FGFR-3, PLP, and DM-20 antigens. Unlike oligodendrocyte precursor cell, it does not initially express PDGFR-alpha and can differentiate into both type-1 and type-2 astrocytes.")
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