Use MergeVCFs instead of vcftools for gatk merging #90
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| name: test | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install Nextflow | |
| run: | | |
| curl -s https://get.nextflow.io | bash | |
| sudo mv nextflow /usr/local/bin/ | |
| - name: Run movp test | |
| run: | | |
| nextflow run marine-omics/movp -profile docker,test -r main | |
| - name: Show Log | |
| if: always() | |
| run: | | |
| cat .nextflow.log |