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Use MergeVCFs instead of vcftools for gatk merging
test #90: Commit 0cceccb pushed by iracooke
October 27, 2024 03:11 13m 50s main
October 27, 2024 03:11 13m 50s
Cleanup noisy view command
test #89: Commit e7a683f pushed by iracooke
October 27, 2024 02:21 13m 16s main
October 27, 2024 02:21 13m 16s
Use scatter for gatk
test #88: Commit 052d914 pushed by iracooke
October 27, 2024 00:03 13m 49s main
October 27, 2024 00:03 13m 49s
Update defaults for bcftools:
test #87: Commit ceeb2d2 pushed by iracooke
October 8, 2024 18:44 3m 28s main
October 8, 2024 18:44 3m 28s
October 6, 2024 20:58 3m 17s
Make genomics2 more efficient
test #85: Commit 31ec82e pushed by iracooke
October 4, 2024 05:13 3m 25s main
October 4, 2024 05:13 3m 25s
Update genomics config
test #84: Commit 326762e pushed by iracooke
September 27, 2024 02:11 3m 15s main
September 27, 2024 02:11 3m 15s
Update genomics config
test #83: Commit eb894cd pushed by iracooke
September 27, 2024 01:55 3m 23s main
September 27, 2024 01:55 3m 23s
Update genomics config
test #82: Commit e8bc395 pushed by iracooke
September 27, 2024 01:53 3m 17s main
September 27, 2024 01:53 3m 17s
Update genomics config
test #81: Commit 6bd42fa pushed by iracooke
September 27, 2024 01:50 3m 17s main
September 27, 2024 01:50 3m 17s
Make scratch true the default for setonix
test #80: Commit befd6ec pushed by iracooke
September 23, 2024 05:55 3m 23s main
September 23, 2024 05:55 3m 23s
Include tbi in haplotype_caller outputs
test #79: Commit f1778d3 pushed by iracooke
September 23, 2024 05:47 3m 11s main
September 23, 2024 05:47 3m 11s
Keep index from haplotype caller
test #78: Commit 94211c1 pushed by iracooke
September 23, 2024 05:35 2m 37s main
September 23, 2024 05:35 2m 37s
Revert previous change
test #77: Commit edf08cc pushed by iracooke
September 23, 2024 05:12 3m 14s main
September 23, 2024 05:12 3m 14s
Remove symlinks after freebayes
test #76: Commit 505848e pushed by iracooke
September 23, 2024 04:09 3m 36s main
September 23, 2024 04:09 3m 36s
Update setonix config
test #75: Commit a525b00 pushed by iracooke
September 19, 2024 20:13 3m 31s main
September 19, 2024 20:13 3m 31s
Update github action to test all callers
test #74: Commit 1d178cb pushed by iracooke
September 13, 2024 06:44 3m 25s main
September 13, 2024 06:44 3m 25s
Update readme
test #73: Commit ba8eaab pushed by iracooke
September 13, 2024 06:43 3m 18s main
September 13, 2024 06:43 3m 18s
Fix memory requirements
test #72: Commit 7a49233 pushed by iracooke
September 13, 2024 06:41 3m 31s main
September 13, 2024 06:41 3m 31s
Attempt to fix docker permissions issue
test #71: Commit d8a277a pushed by iracooke
September 13, 2024 05:27 3m 21s main
September 13, 2024 05:27 3m 21s
Fix syntax error in setonix config
test #70: Commit 54c76cc pushed by iracooke
September 13, 2024 01:05 3m 47s main
September 13, 2024 01:05 3m 47s
Refactor configs
test #69: Commit 0e59a15 pushed by iracooke
September 13, 2024 00:59 3m 29s main
September 13, 2024 00:59 3m 29s
Refactor configs
test #68: Commit b9a34ef pushed by iracooke
September 13, 2024 00:52 3m 31s main
September 13, 2024 00:52 3m 31s
Refactor configs
test #67: Commit a517ae2 pushed by iracooke
September 13, 2024 00:46 3m 26s main
September 13, 2024 00:46 3m 26s
Refactor configs
test #66: Commit 1bbbdd9 pushed by iracooke
September 13, 2024 00:45 Failure main
September 13, 2024 00:45 Failure