v0.2-beta - 8/6/2014
- Organized/rearranged the pipeline into PART1 and PART2
- Read number prediction more accurate (unique reads), happens later in the pipeline
- Users have option to check the read numbers/high expressors before running steps in PART2
- Added strand-specific coverage option (can be set in the config file)
- Fixed bugs (compress step and runall_shuf.pl script)