#RNA-Seq #Normalization #Quantification
PORT is a resampling based read-level normalization and quantification pipeline for RNA-Seq differential expression analysis and it offers two types of normalization: GENE Normalization and EXON-INTRON-JUNCTION Normalization.
Please see the PORT wiki for usage, input/output files and an explanation of the pipeline.
PORT is designed to be run on a compute cluster. It has been tested on SGE and LSF.