Merge pull request #35 from zktuong/plot_cpdb3

Plot cpdb3

.Rbuildignore

@@ -0,0 +1 @@
+^\.covrignore$

.covrignore

@@ -0,0 +1,3 @@
+R/init_ktplots.R
+R/ktplots.R
+R/correlationSpot.R

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: ktplots
 Title: Plot single-cell data dotplots
-Version: 1.1.19
+Version: 1.1.20
 Authors@R: person("Kelvin", "Tuong", email = c("z.tuong@uq.edu.au", "zkt22@cam.ac.uk", "kt16@sanger.ac.uk"), role = c("aut", "cre"))
 Description: Plotting tools for scData.
 License: MIT
@@ -17,21 +17,16 @@ Imports:
 	viridis,
 	gtools,	
 	RColorBrewer,
-	purrr,
-	patchwork,
-	BiocParallel
+	circlize
 Suggests:
 	SummarizedExperiment,
 	SingleCellExperiment,
-	Seurat,
-	lmerTest,
-	car,
+	scater,
 	testthat,
 	covr,
+	ComplexHeatmap,
 	plyr
 Depends:
 	ggplot2
-Remotes: 
-  	zktuong/patchwork
 LazyData: true
 RoxygenNote: 7.1.2

NAMESPACE

@@ -1,31 +1,23 @@
 # Generated by roxygen2: do not edit by hand
 
 export("%nin%")
-export(GeomFlatViolin)
-export(StackedVlnPlot)
 export(bottomleft_legend)
 export(bottomright_legend)
-export(compare_cpdb)
 export(correlationSpot)
-export(extract_max)
 export(geneDotPlot)
-export(geom_flat_violin)
 export(init)
 export(init_ktplots)
 export(ktplots)
-export(modify_vlnplot)
-export(plot_compare_cpdb)
 export(plot_cpdb)
 export(plot_cpdb2)
-export(rainCloudPlot)
+export(plot_cpdb3)
 export(range01)
 export(small_axis)
 export(small_grid)
 export(small_guide)
 export(small_legend)
 export(topleft_legend)
 export(topright_legend)
-import(BiocParallel)
 import(Matrix)
 import(RColorBrewer)
 import(devtools)
@@ -34,7 +26,8 @@ import(ggplot2)
 import(ggraph)
 import(ggrepel)
 import(gtools)
-import(patchwork)
-import(purrr)
 import(reshape2)
 import(viridis)
+importFrom(circlize,chordDiagram)
+importFrom(circlize,circos.clear)
+importFrom(grDevices,recordPlot)