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@wtsi-npg

Wellcome Sanger Institute - NPG

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  1. illumina2bam illumina2bam Public

    Generate and process BAM files from Illumina sequencing instrument files

    Java 23 18

  2. baton baton Public

    iRODS client programs and API

    C 19 19

  3. npg_seq_pipeline npg_seq_pipeline Public

    Processing and analysis of data coming from Illumina sequencing machines

    Perl 9 17

  4. bambi bambi Public

    Process Illumina instrument data into SAM/BAM/CRAM files.

    C 9 15

  5. Percolate Percolate Public archive

    A parallel workflow management application.

    Ruby 6 4

  6. genotyping genotyping Public

    Components of the WTSI genotype analysis pipeline.

    Perl 5 7

Repositories

Showing 10 of 79 repositories
  • npg-irods-python Public

    Applications for the management of data and metadata in iRODS

    wtsi-npg/npg-irods-python’s past year of commit activity
    Python 1 GPL-3.0 7 1 3 Updated Oct 22, 2024
  • npg-python-lib Public

    A library of Python functions and classes common to NPG applications

    wtsi-npg/npg-python-lib’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Oct 22, 2024
  • partisan Public

    A Python client API for iRODS

    wtsi-npg/partisan’s past year of commit activity
    Python 1 GPL-3.0 5 1 1 Updated Oct 22, 2024
  • npg_qc Public

    QC checks and metrics for Illumina NGS data

    wtsi-npg/npg_qc’s past year of commit activity
    Perl 5 17 20 0 Updated Oct 22, 2024
  • p4 Public

    Process and Pipe Pipeline Panacea

    wtsi-npg/p4’s past year of commit activity
    Perl 3 15 8 10 Updated Oct 18, 2024
  • npg_langqc Public
    wtsi-npg/npg_langqc’s past year of commit activity
    Python 0 GPL-3.0 5 2 1 Updated Oct 17, 2024
  • npg_irods Public

    Tools for managing HTS (BAM and CRAM) format files in iRODS.

    wtsi-npg/npg_irods’s past year of commit activity
    Perl 2 GPL-3.0 17 17 2 Updated Oct 17, 2024
  • npg_tracking Public

    WTSI Illumina sequencing instruments (HiSeq, MiSeq, GA) tracking

    wtsi-npg/npg_tracking’s past year of commit activity
    Perl 3 19 12 2 Updated Oct 15, 2024
  • ml_warehouse Public

    Perl DBIx binding to a warehouse housing data from multiple LIM systems

    wtsi-npg/ml_warehouse’s past year of commit activity
    Perl 3 14 1 0 Updated Oct 14, 2024
  • npg_seq_pipeline Public

    Processing and analysis of data coming from Illumina sequencing machines

    wtsi-npg/npg_seq_pipeline’s past year of commit activity
    Perl 9 17 23 7 Updated Oct 9, 2024
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