Merge commit 'e4fd5099b924e63e7fc9e3e67c3491468597dea3' #156
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| name: ci | |
| on: | |
| pull_request: | |
| types: [opened, synchronize, reopened, ready_for_review] | |
| paths-ignore: | |
| - '.github/workflows/dist.yml' | |
| - '.github/workflows/wheels.yml' | |
| - '.gitignore' | |
| - 'build-all-presets.sh' | |
| - 'CMakePresets.json' | |
| push: | |
| # branches: | |
| # - master | |
| paths-ignore: | |
| - '.github/workflows/dist.yml' | |
| - '.github/workflows/wheels.yml' | |
| - '.gitignore' | |
| - 'build-all-presets.sh' | |
| - 'CMakePresets.json' | |
| workflow_dispatch: | |
| inputs: | |
| # name: | |
| # description: 'NAME: File will be called name.lowercase()-VER-REL.tar.gz' | |
| # required: true | |
| # default: 'PhreeqcRM' | |
| date: | |
| description: 'DATE: Leave blank to use todays date' | |
| required: false | |
| default: '' | |
| rel: | |
| description: 'REL: Leave blank to automatically generate (2021-03-09 = 15700)' | |
| required: false | |
| default: '' | |
| ver: | |
| description: 'VER: Leave blank to use MAJOR.MINOR.(PATCH+1) (from https://github.com/usgs-coupled/phreeqc-version/blob/main/phreeqc-version.txt)' | |
| required: false | |
| default: '' | |
| env: | |
| # NAME: PhreeqcRM | |
| BUILD_TYPE: Release | |
| jobs: | |
| log-the-inputs: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - run: | | |
| # echo "Name: $NAME" | |
| echo "Date: $DATE" | |
| echo "REL: $REL" | |
| echo "VER: $VER" | |
| env: | |
| # NAME: ${{ inputs.name }} | |
| DATE: ${{ inputs.date }} | |
| REL: ${{ inputs.rel }} | |
| VER: ${{ inputs.ver }} | |
| init: | |
| if: github.event.pull_request.draft == false | |
| runs-on: ubuntu-latest | |
| env: | |
| # NAME: ${{ inputs.name }} | |
| DATE: ${{ inputs.date }} | |
| REL: ${{ inputs.rel }} | |
| VER: ${{ inputs.ver }} | |
| # Map step outputs to job outputs | |
| outputs: | |
| # NAME: ${{ steps.vars.outputs.NAME }} | |
| # NAME_LOWERCASE: ${{ steps.vars.outputs.NAME_LOWERCASE }} | |
| VER: ${{ steps.vars.outputs.VER }} | |
| REL: ${{ steps.vars.outputs.REL }} | |
| DATE: ${{ steps.vars.outputs.DATE }} | |
| DATE_FULL: ${{ steps.vars.outputs.DATE_FULL }} | |
| DATE_RFC_3339: ${{ steps.vars.outputs.DATE_RFC_3339 }} | |
| steps: | |
| - name: Setup vars | |
| id: vars | |
| run: | | |
| # if [ -z "${NAME}" ]; then | |
| # echo NAME="PhreeqcRM" >> "${GITHUB_OUTPUT}" | |
| # echo NAME_LOWERCASE=$(echo "PhreeqcRM" | tr '[:upper:]' '[:lower:]') >> "${GITHUB_OUTPUT}" | |
| # else | |
| # echo NAME="${NAME}" >> "${GITHUB_OUTPUT}" | |
| # echo NAME_LOWERCASE=$(echo "${NAME}" | tr '[:upper:]' '[:lower:]') >> "${GITHUB_OUTPUT}" | |
| # fi | |
| if [ -z "${VER}" ]; then | |
| echo VER="$(curl -sS https://raw.githubusercontent.com/usgs-coupled/phreeqc-version/main/next_ver.sh | sh)" >> "${GITHUB_OUTPUT}" | |
| else | |
| echo VER="${VER}" >> "${GITHUB_OUTPUT}" | |
| fi | |
| if [ -z "${REL}" ]; then | |
| echo REL="$(curl -sS https://raw.githubusercontent.com/usgs-coupled/phreeqc-version/main/rel.py | python3)" >> "${GITHUB_OUTPUT}" | |
| else | |
| echo REL="${REL}" >> "${GITHUB_OUTPUT}" | |
| fi | |
| if [ -z "${DATE}" ]; then | |
| echo DATE="$(TZ='America/Denver' date '+%x')" >> "${GITHUB_OUTPUT}" | |
| echo DATE_RFC_3339="$(TZ='America/Denver' date --rfc-3339=date)" >> "${GITHUB_OUTPUT}" | |
| echo DATE_FULL="$(TZ='America/Denver' date)" >> "${GITHUB_OUTPUT}" | |
| else | |
| echo DATE="${DATE}" >> "${GITHUB_OUTPUT}" | |
| echo DATE_RFC_3339="$(TZ='America/Denver' date --rfc-3339=date --date=${DATE})" >> "${GITHUB_OUTPUT}" | |
| echo DATE_FULL="$(TZ='America/Denver' date --date=${DATE})" >> "${GITHUB_OUTPUT}" | |
| fi | |
| results: | |
| name: display results | |
| needs: init | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: results | |
| run: | | |
| # echo NAME="${{ needs.init.outputs.NAME }}" | |
| echo VER="${{ needs.init.outputs.VER }}" | |
| echo REL="${{ needs.init.outputs.REL }}" | |
| echo DATE="${{ needs.init.outputs.DATE }}" | |
| echo DATE_RFC_3339="${{ needs.init.outputs.DATE_RFC_3339 }}" | |
| echo DATE_FULL="${{ needs.init.outputs.DATE_FULL }}" | |
| # echo TARBALL="${{ needs.init.outputs.NAME_LOWERCASE }}-${{ needs.init.outputs.VER }}-${{ needs.init.outputs.REL }}.tar.gz" | |
| echo TARBALL="phreeqcrm-${{ needs.init.outputs.VER }}-${{ needs.init.outputs.REL }}.tar.gz" | |
| valgrind: | |
| # if: ${{ false }} | |
| name: valgrind | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: update apt-get | |
| run: sudo apt-get -y update | |
| - name: install yaml-cpp | |
| run: sudo apt-get -y install libyaml-cpp-dev | |
| - name: install ninja | |
| run: sudo apt-get -y install ninja-build | |
| - name: install libc6-dbg | |
| run: sudo apt-get -y install libc6-dbg | |
| - name: install valgrind | |
| run: sudo snap install valgrind --classic | |
| - name: ctest -S cmemcheck.cmake | |
| run: ctest -S cmemcheck.cmake -VV --output-on-failure -j 2 | |
| distcheck: | |
| # if: ${{ false }} | |
| name: make distcheck | |
| needs: init | |
| runs-on: ubuntu-latest | |
| # env: | |
| # # NAME is consumed by jenkins-dist.sh | |
| # NAME: ${{ needs.init.outputs.NAME }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: autoreconf | |
| run: autoreconf -fvi | |
| - name: versioning | |
| run: ./jenkins-dist.sh -v ${{ needs.init.outputs.VER }} -r ${{ needs.init.outputs.REL }} -d ${{ needs.init.outputs.DATE }} | |
| - name: prepare doxygen | |
| run: sudo apt-get -y install doxygen graphviz | |
| - name: update doxygen using micromamba env | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: Doxygen/doxygen.environment.yml | |
| - name: run doxygen | |
| shell: micromamba-shell {0} | |
| run: cd Doxygen && make | |
| - name: install yaml-cpp and dos2unix | |
| run: sudo apt-get -y install libyaml-cpp-dev dos2unix | |
| - name: mkdir | |
| run: mkdir ${{github.workspace}}/_build | |
| - name: configure | |
| shell: bash | |
| working-directory: ${{github.workspace}}/_build | |
| run: ../configure --prefix=$(pwd)/INSTALL | |
| - name: make distcheck | |
| shell: bash | |
| working-directory: ${{github.workspace}}/_build | |
| run: DISTCHECK_CONFIGURE_FLAGS="--enable-fortran-test --with-yaml-cpp" make -j2 distcheck | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: tarball | |
| path: ${{github.workspace}}/_build/*.tar.gz | |
| - name: PhreeqcRM_ReadMe.txt | |
| shell: bash | |
| run: cp doc/README.TXT PhreeqcRM_ReadMe.txt | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: readme | |
| path: ${{github.workspace}}/PhreeqcRM_ReadMe.txt | |
| - name: unix2dos | |
| shell: bash | |
| run: git ls-files --eol | grep -v '^i/-text' | grep -v '^i/ ' | grep -v 'Makefile.am' | grep -v 'configure.ac' | awk -F $'\t' '{print $2}' | xargs unix2dos | |
| - name: make dist-zip | |
| shell: bash | |
| working-directory: ${{github.workspace}}/_build | |
| run: make dist-zip | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: zip | |
| path: ${{github.workspace}}/_build/*.zip | |
| autotools: | |
| # if: ${{ false }} | |
| name: autotools | |
| needs: [init, distcheck] | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [macos-latest, ubuntu-latest] | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| VER_STRING: ${{ needs.init.outputs.VER }}-${{ needs.init.outputs.REL }} | |
| steps: | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: tarball | |
| # - name: Install GNU Fortran (macOS) | |
| # if: ${{ runner.os == 'macOS' }} | |
| # uses: awvwgk/setup-fortran@main | |
| # with: | |
| # compiler: gcc | |
| # version: 12 | |
| # - name: Verify gfortran | |
| # run: | | |
| # which gfortran | |
| # gfortran --version | |
| - name: Install ninja yaml-cpp valgrind (Linux) | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get -y update | |
| sudo apt-get install -y ninja-build valgrind libyaml-cpp-dev | |
| - name: Install gcc(gfortran) ninja yaml-cpp (macOS) | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew reinstall gcc | |
| brew install ninja yaml-cpp | |
| # ls -alR /usr/local/Cellar/ | |
| - name: Verify gfortran | |
| run: | | |
| which gfortran | |
| gfortran --version | |
| - name: Extract tarball | |
| run: tar xvzf phreeqcrm-${{ env.VER_STRING }}.tar.gz | |
| - name: mkdir build | |
| run: mkdir ${{ github.workspace }}/build | |
| - name: Configure with autotools | |
| working-directory: ${{ github.workspace }}/build | |
| run: ../phreeqcrm-${{ env.VER_STRING }}/configure --enable-fortran-test --with-yaml-cpp | |
| - name: Print phreeqcrm.pc | |
| working-directory: ${{ github.workspace }}/build | |
| run: cat phreeqcrm.pc | |
| - name: Build with autotools | |
| working-directory: ${{ github.workspace }}/build | |
| run: make -j4 | |
| - name: Make check | |
| working-directory: ${{ github.workspace }}/build | |
| run: make check -j4 | |
| - name: cat Tests/test-suite.log | |
| if: ${{ always() }} | |
| working-directory: ${{ github.workspace }}/build | |
| run: cat Tests/test-suite.log | |
| - name: Install with autotools | |
| working-directory: ${{ github.workspace }}/build | |
| run: sudo make install | |
| - name: Run ldconfig (Linux) | |
| if: runner.os == 'Linux' | |
| working-directory: ${{ github.workspace }}/build | |
| run: sudo ldconfig | |
| - name: Cleanup | |
| run: rm -rf * | |
| - name: Check phreeqcrm.pc | |
| run: ls -al /usr/local/share/pkgconfig | |
| - name: Set PKG_CONFIG_PATH (macOS) | |
| if: runner.os == 'macOS' | |
| run: echo "PKG_CONFIG_PATH=/usr/local/share/pkgconfig" >> $GITHUB_ENV | |
| - name: Check phreeqcrm.pc cflags | |
| run: pkg-config --cflags phreeqcrm | |
| - name: Check phreeqcrm.pc libs | |
| run: pkg-config --libs phreeqcrm | |
| - uses: actions/checkout@v4 | |
| - name: Test autotools install | |
| working-directory: ${{ github.workspace }}/Tests | |
| run: env CC='cc' CXX='c++ -std=c++11' make -f autotools.mk autotools_test && ./autotools_test | |
| - name: Clean autotools test | |
| working-directory: ${{ github.workspace }}/Tests | |
| run: make -f autotools.mk clean | |
| - name: Test autotools pkg-config | |
| working-directory: ${{ github.workspace }}/Tests | |
| run: env CC='cc' CXX='c++ -std=c++11' make -f pkgconfig.mk pkgconfig_test && ./pkgconfig_test | |
| cmake: | |
| # if: ${{ false }} | |
| name: ${{ matrix.os }} shared=${{ matrix.build_shared_libs }} yaml=${{ matrix.phreeqcrm_with_yaml_cpp }} type=${{ matrix.BUILD_TYPE }} | |
| needs: [init, distcheck] | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [macos-12, ubuntu-20.04, ubuntu-22.04, windows-2019, windows-2022] | |
| build_shared_libs: [OFF, ON] | |
| phreeqcrm_with_yaml_cpp: [OFF, ON] | |
| BUILD_TYPE: [Debug, Release] | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| VER_STRING: ${{ needs.init.outputs.VER }}-${{ needs.init.outputs.REL }} | |
| steps: | |
| # Note: This allows ${{ env.VCPKG_INSTALLATION_ROOT }} to be used in the remaining steps | |
| # Although its already set in the environment it can't be accessed using the env context | |
| # until it is stored in the $GITHUB_ENV file | |
| - name: init VCPKG_INSTALLATION_ROOT | |
| shell: bash | |
| run: echo "VCPKG_INSTALLATION_ROOT=$VCPKG_INSTALLATION_ROOT" >> $GITHUB_ENV | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: tarball | |
| - name: Install GNU Fortran (macOS) | |
| if: ${{ runner.os == 'macOS' }} | |
| uses: fortran-lang/setup-fortran@v1 | |
| with: | |
| compiler: gcc | |
| version: 12 | |
| - name: Install oneAPI Fortran (Windows) | |
| if: ${{ runner.os == 'Windows' }} | |
| uses: fortran-lang/setup-fortran@v1 | |
| with: | |
| compiler: intel-classic | |
| version: '2021.10' | |
| - name: Unset CC/CXX (Windows) | |
| if: runner.os == 'Windows' | |
| shell: bash | |
| run: | | |
| echo "CC=" >> $GITHUB_ENV | |
| echo "CXX=" >> $GITHUB_ENV | |
| - name: Install ninja valgrind (Linux) | |
| if: ${{ runner.os == 'Linux' }} | |
| #run: sudo apt-get install -y ninja-build valgrind libyaml-cpp-dev python3-numpy | |
| run: | | |
| sudo apt-get -y update | |
| sudo apt-get install -y ninja-build valgrind | |
| - name: Install ninja (macOS) | |
| if: ${{ runner.os == 'macOS' }} | |
| run: | | |
| brew install ninja | |
| ls -alR /usr/local/Cellar/ | |
| - name: Install yaml-cpp (Linux) | |
| if: ${{ runner.os == 'Linux' && matrix.phreeqcrm_with_yaml_cpp == 'ON' }} | |
| run: vcpkg install yaml-cpp:x64-linux | |
| - name: Install yaml-cpp (macOS) | |
| if: ${{ runner.os == 'macOS' && matrix.phreeqcrm_with_yaml_cpp == 'ON' }} | |
| run: vcpkg install yaml-cpp:x64-osx | |
| - name: Install yaml-cpp (Windows) | |
| if: ${{ runner.os == 'Windows' && matrix.phreeqcrm_with_yaml_cpp == 'ON' }} | |
| run: vcpkg install yaml-cpp:x64-windows | |
| # - name: Set up Python ${{ matrix.python-version }} | |
| - name: Set up Python 3.8 | |
| uses: actions/setup-python@v5 | |
| with: | |
| # python-version: ${{ matrix.python-version }} | |
| python-version: 3.8 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install numpy | |
| python -m pip install PyYAML | |
| python -m pip install pytest | |
| # @todo if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| - name: Set up Visual Studio shell (Windows) | |
| if: runner.os == 'Windows' | |
| uses: egor-tensin/vs-shell@v2 | |
| with: | |
| arch: x64 | |
| - name: Extract tarball | |
| run: tar xvzf phreeqcrm-${{ env.VER_STRING }}.tar.gz | |
| - name: Configure with CMake | |
| if: ${{ matrix.phreeqcrm_with_yaml_cpp != 'ON' }} | |
| run: cmake -L -G Ninja -B build -S phreeqcrm-${{ env.VER_STRING }} -DCMAKE_BUILD_TYPE=${{ env.BUILD_TYPE }} -DBUILD_SHARED_LIBS:BOOL=${{ matrix.build_shared_libs }} -DPHREEQCRM_WITH_YAML_CPP=${{ matrix.phreeqcrm_with_yaml_cpp }} -DPHREEQCRM_FORTRAN_TESTING:BOOL=ON | |
| - name: Configure with CMake (using vcpkg toolchain) | |
| if: ${{ matrix.phreeqcrm_with_yaml_cpp == 'ON' }} | |
| run: cmake -L -G Ninja --toolchain ${{ env.VCPKG_INSTALLATION_ROOT }}/scripts/buildsystems/vcpkg.cmake -B build -S phreeqcrm-${{ env.VER_STRING }} -DCMAKE_BUILD_TYPE=${{ env.BUILD_TYPE }} -DBUILD_SHARED_LIBS:BOOL=${{ matrix.build_shared_libs }} -DPHREEQCRM_WITH_YAML_CPP=${{ matrix.phreeqcrm_with_yaml_cpp }} -DPHREEQCRM_FORTRAN_TESTING:BOOL=ON -DPHREEQCRM_BUILD_PYTHON:BOOL=ON | |
| - name: Print phreeqcrm.pc | |
| working-directory: ${{ github.workspace }}/build | |
| run: cat phreeqcrm.pc | |
| - name: Build with CMake | |
| run: cmake --build ${{ github.workspace }}/build --config ${{ env.BUILD_TYPE }} | |
| - name: Test with CMake | |
| working-directory: ${{ github.workspace }}/build | |
| run: ctest -C ${{ env.BUILD_TYPE }} --output-on-failure | |
| - name: Install (Non-Windows) | |
| if: runner.os != 'Windows' | |
| run: sudo cmake --install build | |
| - name: Install (Windows) | |
| if: runner.os == 'Windows' | |
| run: cmake --install build | |
| - name: Run ldconfig (Linux) | |
| if: ${{ runner.os == 'Linux' && matrix.build_shared_libs == 'ON' }} | |
| run: sudo ldconfig | |
| - name: Cleanup (Non-Windows) | |
| if: runner.os != 'Windows' | |
| run: sudo rm -rf * | |
| - name: Cleanup (Windows) | |
| if: runner.os == 'Windows' | |
| run: Remove-Item -Recurse -Force * | |
| - uses: actions/checkout@v4 | |
| - name: Test install (configure) (Non-Windows) | |
| if: ${{ matrix.phreeqcrm_with_yaml_cpp != 'ON' }} | |
| working-directory: ${{ github.workspace }}/Tests | |
| run: cmake -L -G Ninja -B build -S . -DCMAKE_BUILD_TYPE=${{ env.BUILD_TYPE }} -D_PHREEQCRM_TEST_INSTALL:BOOL=ON -DPHREEQCRM_FORTRAN_TESTING:BOOL=ON | |
| - name: Test install (configure) (using vcpkg toolchain) | |
| if: ${{ matrix.phreeqcrm_with_yaml_cpp == 'ON' }} | |
| working-directory: ${{ github.workspace }}/Tests | |
| run: cmake -L -G Ninja --toolchain ${{ env.VCPKG_INSTALLATION_ROOT }}/scripts/buildsystems/vcpkg.cmake -B build -S . -DCMAKE_BUILD_TYPE=${{ env.BUILD_TYPE }} -D_PHREEQCRM_TEST_INSTALL:BOOL=ON -DPHREEQCRM_FORTRAN_TESTING:BOOL=ON | |
| - name: Test install (build) | |
| working-directory: ${{ github.workspace }}/Tests | |
| run: cmake --build build --config ${{ env.BUILD_TYPE }} | |
| - name: Test install (ctest) (Non-Windows) | |
| if: runner.os != 'Windows' | |
| working-directory: ${{ github.workspace }}/Tests/build | |
| run: ctest -C ${{ env.BUILD_TYPE }} --output-on-failure | |
| - name: Test install (ctest) (Windows) | |
| if: runner.os == 'Windows' | |
| working-directory: ${{ github.workspace }}/Tests/build | |
| run: | | |
| $env:PATH="${{ env.VCPKG_INSTALLATION_ROOT }}\packages\yaml-cpp_x64-windows\bin;C:\Program Files (x86)\PhreeqcRM\bin;$env:PATH" | |
| ctest -C ${{ env.BUILD_TYPE }} --output-on-failure | |
| cmake-mpi: | |
| if: ${{ false }} | |
| name: ${{ matrix.os }} mpi=${{ matrix.mpi }} shared=${{ matrix.build_shared_libs }} yaml=${{ matrix.phreeqcrm_with_yaml_cpp }} | |
| needs: [init, distcheck] | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [macos-12, ubuntu-20.04, ubuntu-22.04, windows-2019, windows-2022] | |
| build_shared_libs: [ON] | |
| phreeqcrm_with_yaml_cpp: [ON] | |
| mpi: ['mpich', 'ompi', 'impi', 'msmpi'] # see https://github.com/mpi4py/setup-mpi/blob/master/setup-mpi.sh | |
| # BUILD_TYPE: [Debug, Release] | |
| exclude: | |
| - os: macos-12 | |
| mpi: 'impi' | |
| - os: macos-12 | |
| mpi: 'msmpi' | |
| - os: ubuntu-20.04 | |
| mpi: 'msmpi' | |
| - os: ubuntu-22.04 | |
| mpi: 'msmpi' | |
| - os: windows-2019 | |
| mpi: 'mpich' | |
| - os: windows-2019 | |
| mpi: 'ompi' | |
| - os: windows-2022 | |
| mpi: 'mpich' | |
| - os: windows-2022 | |
| mpi: 'ompi' | |
| timeout-minutes: 20 | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| VER_STRING: ${{ needs.init.outputs.VER }}-${{ needs.init.outputs.REL }} | |
| steps: | |
| # Note: This allows ${{ env.VCPKG_INSTALLATION_ROOT }} to be used in the remaining steps | |
| # Although its already set in the environment it can't be accessed using the env context | |
| # until it is stored in the $GITHUB_ENV file | |
| - name: init VCPKG_INSTALLATION_ROOT | |
| shell: bash | |
| run: echo "VCPKG_INSTALLATION_ROOT=$VCPKG_INSTALLATION_ROOT" >> $GITHUB_ENV | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: tarball | |
| - name: Install GNU Fortran (macOS) | |
| if: ${{ runner.os == 'macOS' }} | |
| uses: awvwgk/setup-fortran@main | |
| with: | |
| compiler: gcc | |
| version: 12 | |
| # - name: Install oneAPI Fortran (Windows) | |
| # if: ${{ runner.os == 'Windows' }} | |
| # uses: i-RIC/install-intelfortran-action@v1 | |
| # with: | |
| # cache: true | |
| - name: Install ninja (Linux) | |
| if: ${{ runner.os == 'Linux' }} | |
| #run: sudo apt-get install -y ninja-build valgrind libyaml-cpp-dev python3-numpy | |
| run: | | |
| sudo apt-get -y update | |
| sudo apt-get install -y ninja-build | |
| - name: Install ninja (macOS) | |
| if: ${{ runner.os == 'macOS' }} | |
| run: | | |
| brew install ninja | |
| ls -alR /usr/local/Cellar/ | |
| - name: Install yaml-cpp (Linux) | |
| if: ${{ runner.os == 'Linux' && matrix.phreeqcrm_with_yaml_cpp == 'ON' }} | |
| run: vcpkg install yaml-cpp:x64-linux | |
| - name: Install yaml-cpp (macOS) | |
| if: ${{ runner.os == 'macOS' && matrix.phreeqcrm_with_yaml_cpp == 'ON' }} | |
| run: vcpkg install yaml-cpp:x64-osx | |
| - name: Install yaml-cpp (Windows) | |
| if: ${{ runner.os == 'Windows' && matrix.phreeqcrm_with_yaml_cpp == 'ON' }} | |
| run: vcpkg install yaml-cpp:x64-windows | |
| # # - name: Set up Python ${{ matrix.python-version }} | |
| # - name: Set up Python 3.8 | |
| # uses: actions/setup-python@v5 | |
| # with: | |
| # # python-version: ${{ matrix.python-version }} | |
| # python-version: 3.8 | |
| # - name: Install dependencies | |
| # run: | | |
| # python -m pip install --upgrade pip | |
| # python -m pip install numpy | |
| # python -m pip install PyYAML | |
| # python -m pip install pytest | |
| # # @todo if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| # Note: this makes the entire environment available using ${{ env.VARIABLE }} syntax | |
| # see above | |
| - name: Set up Visual Studio shell (Windows) | |
| if: runner.os == 'Windows' | |
| uses: egor-tensin/vs-shell@v2 | |
| with: | |
| arch: x64 | |
| - name: Setup mpi | |
| uses: mpi4py/setup-mpi@v1 | |
| with: | |
| mpi: ${{ matrix.mpi }} | |
| - name: CMake version | |
| run: cmake --version | |
| - name: Locate CMake | |
| if: runner.os == 'Windows' | |
| shell: cmd | |
| run: | | |
| where cmake | |
| - name: Extract tarball | |
| run: tar xvzf phreeqcrm-${{ env.VER_STRING }}.tar.gz | |
| - name: Configure with CMake | |
| if: ${{ matrix.phreeqcrm_with_yaml_cpp != 'ON' }} | |
| run: cmake -G Ninja -B build -S phreeqcrm-${{ env.VER_STRING }} -DCMAKE_BUILD_TYPE=${{ env.BUILD_TYPE }} -DBUILD_SHARED_LIBS:BOOL=${{ matrix.build_shared_libs }} -DPHREEQCRM_WITH_YAML_CPP=${{ matrix.phreeqcrm_with_yaml_cpp }} -DPHREEQCRM_BUILD_MPI:BOOL=ON | |
| - name: Configure with CMake (using vcpkg toolchain) | |
| if: ${{ matrix.phreeqcrm_with_yaml_cpp == 'ON' }} | |
| run: cmake -G Ninja --toolchain ${{ env.VCPKG_INSTALLATION_ROOT }}/scripts/buildsystems/vcpkg.cmake -B build -S phreeqcrm-${{ env.VER_STRING }} -DCMAKE_BUILD_TYPE=${{ env.BUILD_TYPE }} -DBUILD_SHARED_LIBS:BOOL=${{ matrix.build_shared_libs }} -DPHREEQCRM_WITH_YAML_CPP=${{ matrix.phreeqcrm_with_yaml_cpp }} -DPHREEQCRM_BUILD_MPI:BOOL=ON | |
| - name: Print phreeqcrm.pc | |
| working-directory: ${{ github.workspace }}/build | |
| run: cat phreeqcrm.pc | |
| - name: Build with CMake | |
| run: cmake --build ${{ github.workspace }}/build --config ${{ env.BUILD_TYPE }} | |
| - name: Test with CMake | |
| working-directory: ${{ github.workspace }}/build | |
| run: ctest -C ${{ env.BUILD_TYPE }} --output-on-failure | |
| - name: Install (Non-Windows) | |
| if: runner.os != 'Windows' | |
| run: sudo cmake --install build | |
| - name: Install (Windows) | |
| if: runner.os == 'Windows' | |
| run: cmake --install build | |
| # - name: Run ldconfig (Linux) | |
| # if: ${{ runner.os == 'Linux' && matrix.build_shared_libs == 'ON' }} | |
| # run: sudo ldconfig | |
| # - name: Cleanup (Non-Windows) | |
| # if: runner.os != 'Windows' | |
| # run: sudo rm -rf * | |
| # - name: Cleanup (Windows) | |
| # if: runner.os == 'Windows' | |
| # run: Remove-Item -Recurse -Force * | |
| # - uses: actions/checkout@v4 | |
| # - name: Test install (configure) (Non-Windows) | |
| # if: runner.os != 'Windows' | |
| # working-directory: ${{ github.workspace }}/Tests | |
| # run: cmake -G Ninja -B build -S . -DCMAKE_BUILD_TYPE=${{ env.BUILD_TYPE }} -D_PHREEQCRM_TEST_INSTALL:BOOL=ON | |
| # - name: Test install (configure) (Windows) | |
| # if: runner.os == 'Windows' | |
| # working-directory: ${{ github.workspace }}/Tests | |
| # run: cmake -G Ninja --toolchain ${{ env.VCPKG_INSTALLATION_ROOT }}/scripts/buildsystems/vcpkg.cmake -B build -S . -DCMAKE_BUILD_TYPE=${{ env.BUILD_TYPE }} -D_PHREEQCRM_TEST_INSTALL:BOOL=ON | |
| # - name: Test install (build) | |
| # working-directory: ${{ github.workspace }}/Tests | |
| # run: cmake --build build --config ${{ env.BUILD_TYPE }} | |
| # - name: Test install (ctest) (Non-Windows) | |
| # if: runner.os != 'Windows' | |
| # working-directory: ${{ github.workspace }}/Tests/build | |
| # run: ctest -C ${{ env.BUILD_TYPE }} --output-on-failure | |
| # - name: Test install (ctest) (Windows) | |
| # if: runner.os == 'Windows' | |
| # working-directory: ${{ github.workspace }}/Tests/build | |
| # run: | | |
| # $env:PATH="${{ env.VCPKG_INSTALLATION_ROOT }}\packages\yaml-cpp_x64-windows\bin;C:\Program Files (x86)\PhreeqcRM\bin;$env:PATH" | |
| # ctest -C ${{ env.BUILD_TYPE }} --output-on-failure | |
| deploy_pages: | |
| # todo update github.ref below | |
| if: github.repository == 'usgs-coupled/phreeqcrm' && github.ref == 'refs/heads/master' && github.event_name == 'push' | |
| needs: [init, distcheck] | |
| runs-on: ubuntu-latest | |
| # Grant GITHUB_TOKEN the permissions required to make a Pages deployment | |
| permissions: | |
| actions: read # req'd by actions/deploy-pages@v4 | |
| pages: write # to deploy to Pages | |
| id-token: write # to verify the deployment originates from an appropriate source | |
| # Deploy to the github-pages environment | |
| environment: | |
| name: github-pages | |
| url: ${{ steps.deployment.outputs.page_url }} | |
| env: | |
| VER_STRING: ${{ needs.init.outputs.VER }}-${{ needs.init.outputs.REL }} | |
| steps: | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: tarball | |
| - run: tar xvzf phreeqcrm-${{ env.VER_STRING }}.tar.gz | |
| - name: Fix permissions | |
| run: | | |
| chmod -c -R +rX "phreeqcrm-${{ env.VER_STRING }}/Doxygen/html" | while read line; do | |
| echo "::warning title=Invalid file permissions automatically fixed::$line" | |
| done | |
| - name: Upload artifact | |
| uses: actions/upload-pages-artifact@v3 | |
| with: | |
| path: phreeqcrm-${{ env.VER_STRING }}/Doxygen/html | |
| - name: Deploy to GitHub Pages | |
| id: deployment | |
| uses: actions/deploy-pages@v4 |