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Update MQProteogenomics.md
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Thys3Potgieter authored Nov 23, 2023
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4 changes: 2 additions & 2 deletions MQProteogenomics.md
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Expand Up @@ -29,8 +29,8 @@ singularity shell mqproteogenomics_v2.0.4.img
Run the example:
~~~
cd cbio-proteogenomics-tests/lib/testdata/proteogenomics_sample
Singularity> sixframe.sh genomes/ genomes/config.yaml # create the six frame database used by the next step (genomes/sixframe/combined_prot.fasta)
mqproteogenomics.sh mq_proteogeomics_test.yml
sixframe.sh genomes/ genomes/config.yaml # create the six frame database used by the next step (genomes/sixframe/combined_prot.fasta)
mqproteogenomics.sh mq_proteogeomics_test.yml # analyze the data using the six frame translated database
~~~

Now adjust the config file for our own data.
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