Add max diff option (-x) #54
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add max diff option
kloetzl
approved these changes
Mar 6, 2024
kloetzl
approved these changes
Mar 7, 2024
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Stops counting SNP differences above a certain threshold (default: 9_999_999). Adds nearly negligible overhead by comparing diff to maxdiff (https://github.com/boasvdp/snp-dists/blob/master/main.c#L28).
Comparison on an alignment of 500 simulated (non-masked) TB genomes which differ ~2000 SNPs on average, measured using
/usr/bin/time -vand 8 threads:Inspired by the -x option in cgmlst-dists.