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Y24-245 Allow submission from Stock Plate_for the 10x - CITEseq and Emseq pipelines #4322

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@wendyyang wendyyang commented Sep 5, 2024

Closes #

Changes proposed in this pull request

  • add stock plate as limber_pcr_bespoke accetable_purpose
  • add stock plate as a limber input plate
  • update the model 'plate purpose' Stock Plate type to be an 'input' plate
  • remove seeds data of 'stock plate' entry

For existing DB(e.g. UAT and PROD), use the following steps to manually update the Stock Plate purpose:

  1. login to the server, e.g.
    ssh sss0-uat.psd.sanger.ac.uk

  2. Go to the current release directory:
    cd /var/www/sequencescape/current/

  3. Run the console
    bundle exec rails c

    #find the stock plate

    p = PlatePurpose.find_by(name:"Stock Plate")

    #update the type

    p.type = 'PlatePurpose::Input'

    #save it

    p.save

  4. Check the uat database, i.e. psdd. in Mysql Workbench, run query:
    select * from sequencescape_staging.plate_purposes where name = 'Stock Plate';
    check if the stock plate type is 'PlatePurpose::Input'.
    If so, that should mean the update is successful.

Instructions for Reviewers

[All PRs] - Confirm PR template filled
[Feature Branches] - Review code
[Production Merges to main]
    - Check story numbers included
    - Check for debug code
    - Check version

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codecov bot commented Sep 26, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 86.51%. Comparing base (f107b9f) to head (5a4fb4a).

Additional details and impacted files
@@             Coverage Diff             @@
##           develop    #4322      +/-   ##
===========================================
+ Coverage    86.44%   86.51%   +0.07%     
===========================================
  Files         1394     1394              
  Lines        29867    29867              
===========================================
+ Hits         25818    25839      +21     
+ Misses        4049     4028      -21     

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