Y24-271 - LCM Triomics Configuration + Integration Suite Tests

[SHIV5T3R]

Closes sanger/sequencescape#4291

Changes proposed in this pull request

• Added configuration for the initial steps of the pipeline

Instructions for Reviewers

[All PRs] - Confirm PR template filled
[Feature Branches] - Review code
[Production Merges to main]
    - Check story numbers included
    - Check for debug code
    - Check version

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 69.23%. Comparing base (eb33851) to head (1dad932).
Report is 70 commits behind head on develop.

Additional details and impacted files

@@             Coverage Diff             @@
##           develop    #1878      +/-   ##
===========================================
- Coverage    74.54%   69.23%   -5.32%     
===========================================
  Files          421      429       +8     
  Lines        14379    15482    +1103     
===========================================
  Hits         10719    10719              
- Misses        3660     4763    +1103     

Flag	Coverage Δ
javascript	52.07% <ø> (-7.57%)	⬇️
pull_request	74.95% <ø> (?)
push	74.54% <ø> (ø)
ruby	91.19% <ø> (ø)

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[KatyTaylor]

Looks good apart from one suggestion.

[codeclimate]

Code Climate has analyzed commit 1dad932 and detected 0 issues on this pull request.

The test coverage on the diff in this pull request is 100.0% (50% is the threshold).

This pull request will bring the total coverage in the repository to 91.1% (0.0% change).

View more on Code Climate.

[andrewsparkes]

Looks good as a starting point for the pipeline development, thx.

[yoldas]

Looks good. There could be a library type filter for LCM Triomics EMSeq in the pipeline config but I am doing that in EMSeq branch story along with other changes now.