Polished ov util sqliteinfo.

oakvar/api/util.py

@@ -173,6 +173,10 @@ def get_sqliteinfo(fmt: str = "json", outer=None, dbpaths: List[str] = []):
         if not ret:
             c.execute('select colval from info where colkey="inputs"')
             ret = c.fetchone()
+        if not ret:
+            if outer:
+                outer.error(f"{dbpath} does not seem to be a proper OakVar result database file. Exiting.")
+                exit(1)
         input_paths = loads(ret[0].replace("'", '"'))
         if fmt == "text":
             s = "\n# Input files:"

oakvar/cli/util.py

@@ -150,7 +150,7 @@ def get_parser_fn_util():
         "sqliteinfo", help="Show SQLite result file information"
     )
     parser_fn_util_showsqliteinfo.add_argument(
-        "paths", nargs="+", help="SQLite result file paths"
+        "dbpaths", nargs="+", help="SQLite result file paths"
     )
     parser_fn_util_showsqliteinfo.add_argument(
         "--fmt", default="json", help="Output format. text / json / yaml"

setup.py

@@ -29,7 +29,7 @@ def walk_and_add(d, pkg_files):
 walk_and_add("cravat", cravat_files)
 setup(
     name="oakvar",
-    version="2.9.70",
+    version="2.9.71",
     description="A genomic variant analysis platform",
     long_description=long_description,
     long_description_content_type="text/x-rst",