docs: restructure documentation

rformassspectrometry · Sep 25, 2024 · 6cd260f · 6cd260f
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commit 6cd260f
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Showing 8 changed files with 2,321 additions and 2 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -40,9 +40,9 @@ Authors@R: c(person(given = "RforMassSpectrometry Package Maintainer",
 Depends:
     R (>= 4.0.0),
     S4Vectors,
-    BiocParallel,
-    ProtGenerics (>= 1.37.1)
+    BiocParallel
 Imports:
+    ProtGenerics (>= 1.37.1),
     methods,
     IRanges,
     MsCoreUtils (>= 1.7.5),

diff --git a/R/Spectra.R b/R/Spectra.R
@@ -1053,6 +1053,8 @@ asDataFrame <- function(object, i = seq_along(object),
 }
 
 #' @rdname spectraData
+#'
+#' @export
 setMethod("acquisitionNum", "Spectra", function(object)
     acquisitionNum(object@backend))
 
@@ -1195,6 +1197,8 @@ setMethod("mz", "Spectra", function(object, f = processingChunkFactor(object),
 })
 
 #' @rdname spectraData
+#'
+#' @export
 setMethod(
     "peaksData", "Spectra",
     function(object, columns = c("mz", "intensity"),

diff --git a/man/addProcessing.Rd b/man/addProcessing.Rd
diff --git a/man/combinePeaks.Rd b/man/combinePeaks.Rd
diff --git a/man/combineSpectra.Rd b/man/combineSpectra.Rd