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docker: podman-friendly image locations
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Adds fully qualified canonical locations of container images, making the
container technology setup podman-friendly.

Amends cluster creation scripts to support either Docker or Podman
container technologies based on `docker version` information.

Closes #729.
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tiborsimko committed Jul 13, 2023
1 parent 6f86e14 commit cea49fc
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18 changes: 9 additions & 9 deletions helm/configurations/values-dev.yaml
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Expand Up @@ -2,25 +2,25 @@

components:
reana_server:
image: reanahub/reana-server
image: docker.io/reanahub/reana-server
environment:
REANA_SCHEDULER_REQUEUE_SLEEP: 2
REANA_RATELIMIT_SLOW: "5 per second"
reana_workflow_controller:
image: reanahub/reana-workflow-controller
image: docker.io/reanahub/reana-workflow-controller
environment:
REANA_RUNTIME_KUBERNETES_KEEP_ALIVE_JOBS_WITH_STATUSES: failed
reana_workflow_engine_cwl:
image: reanahub/reana-workflow-engine-cwl
image: docker.io/reanahub/reana-workflow-engine-cwl
reana_workflow_engine_yadage:
image: reanahub/reana-workflow-engine-yadage
image: docker.io/reanahub/reana-workflow-engine-yadage
reana_workflow_engine_serial:
image: reanahub/reana-workflow-engine-serial
image: docker.io/reanahub/reana-workflow-engine-serial
reana_workflow_engine_snakemake:
image: reanahub/reana-workflow-engine-snakemake
image: docker.io/reanahub/reana-workflow-engine-snakemake
reana_job_controller:
image: reanahub/reana-job-controller
image: docker.io/reanahub/reana-job-controller
reana_message_broker:
image: reanahub/reana-message-broker
image: docker.io/reanahub/reana-message-broker
reana_ui:
image: reanahub/reana-ui
image: docker.io/reanahub/reana-ui
20 changes: 10 additions & 10 deletions helm/reana/README.md
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Expand Up @@ -9,8 +9,8 @@ This Helm automatically prefixes all names using the release name to avoid colli
| Parameter | Description | Default value |
|----------------------------------------------------------|--------------------------------------------------------------------------------------|-------------------------------------------------|
| `components.reana_db.enabled` | Instantiate a PostgreSQL database inside the cluster | true |
| `components.reana_job_controller.image` | [REANA-Job-Controller image](https://hub.docker.com/r/reanahub/reana-job-controller) to use | `reanahub/reana-job-controller:<chart-release-version>` |
| `components.reana_message_broker.image` | [REANA-Message-Broker image](https://hub.docker.com/r/reanahub/reana-message-broker) to use | `reanahub/reana-message-broker:<chart-release-version>` |
| `components.reana_job_controller.image` | [REANA-Job-Controller image](https://hub.docker.com/r/reanahub/reana-job-controller) to use | `docker.io/reanahub/reana-job-controller:<chart-release-version>` |
| `components.reana_message_broker.image` | [REANA-Message-Broker image](https://hub.docker.com/r/reanahub/reana-message-broker) to use | `docker.io/reanahub/reana-message-broker:<chart-release-version>` |
| `components.reana_message_broker.imagePullPolicy` | REANA-Message-Broker image pull policy | IfNotPresent |
| `components.reana_server.environment` | REANA-Server environment variables | |
| `components.reana_server.environment.REANA_MAX_CONCURRENT_BATCH_WORKFLOWS` | Upper limit on concurrent REANA batch workflows running in the cluster. | 30 |
Expand All @@ -22,7 +22,7 @@ This Helm automatically prefixes all names using the release name to avoid colli
| `components.reana_server.environment.REANA_RATELIMIT_GUEST_USER` | Set API limiter config for guest users. Users using reana-client will be treated as guests. | "20 per second" |
| `components.reana_server.environment.REANA_RATELIMIT_AUTHENTICATED_USER` | Set API limiter config for authenticated web UI users. | "20 per second" |
| `components.reana_server.environment.REANA_RATELIMIT_SLOW` | Set API limiter config for slow endpoints that need to be protected e.g. launch endpoint. | "1/5 second" |
| `components.reana_server.image` | [REANA-Server image](https://hub.docker.com/r/reanahub/reana-server) to use | `reanahub/reana-server:<chart-release-version>` |
| `components.reana_server.image` | [REANA-Server image](https://hub.docker.com/r/reanahub/reana-server) to use | `docker.io/reanahub/reana-server:<chart-release-version>` |
| `components.reana_server.imagePullPolicy` | REANA-Server image pull policy | IfNotPresent |
| `components.reana_server.uwsgi.processes` | Number of uWSGI processes | 6 |
| `components.reana_server.uwsgi.threads` | Number of uWSGI threads | 4 |
Expand All @@ -31,7 +31,7 @@ This Helm automatically prefixes all names using the release name to avoid colli
| `components.reana_server.uwsgi.log_5xx` | Log only error HTTP requests with status code 5xx. To make this configuration effective `components.reana_server.uwsgi.log_all` must be false. | true |
| `components.reana_ui.announcement` | Announcement message displayed in site top banner | None |
| `components.reana_ui.enabled` | Instantiate the [REANA-UI](https://github.com/reanahub/reana-ui) | true |
| `components.reana_ui.image` | [REANA-UI image](https://hub.docker.com/r/reanahub/reana-ui) to use | `reanahub/reana-ui:<chart-release-version>` |
| `components.reana_ui.image` | [REANA-UI image](https://hub.docker.com/r/reanahub/reana-ui) to use | `docker.io/reanahub/reana-ui:<chart-release-version>` |
| `components.reana_ui.imagePullPolicy` | REANA-UI image pull policy | IfNotPresent |
| `components.reana_ui.polling_secs` | Frequency of workflow list page reload in seconds | 15 |
| `components.reana_ui.client_pyvenv` | REANA-Client python environment to source in the welcome example. | None |
Expand All @@ -43,15 +43,15 @@ This Helm automatically prefixes all names using the release name to avoid colli
| `components.reana_ui.local_users` | Enable local users sign in/up | true |
| `components.reana_ui.hide_signup` | Hide users sign up form | false |
| `components.reana_workflow_controller.environment` | REANA-Workflow-Controller environment variables | `{SHARED_VOLUME_PATH: /var/reana}` |
| `components.reana_workflow_controller.image` | [REANA-Workflow-Controller image](https://hub.docker.com/r/reanahub/reana-workflow-controller) to use | `reanahub/reana-workflow-controller:<chart-release-version>` |
| `components.reana_workflow_controller.image` | [REANA-Workflow-Controller image](https://hub.docker.com/r/reanahub/reana-workflow-controller) to use | `docker.io/reanahub/reana-workflow-controller:<chart-release-version>` |
| `components.reana_workflow_controller.imagePullPolicy` | REANA-Workflow-Controller image pull policy | IfNotPresent |
| `components.reana_workflow_controller.environment.REANA_JOB_HOSTPATH_MOUNTS` | JSON list of optional hostPath mounts, for all user jobs. Each mount object has a key `name` (name of the mount), `hostPath` (path to the directory to be mounted from the Kubernetes nodes) and `mountPath` (path inside the job containers where the `hostPath` will be mounted) | None |
| `components.reana_workflow_controller.environment.REANA_RUNTIME_KUBERNETES_KEEP_ALIVE_JOBS_WITH_STATUSES` | Keep alive Kubernetes user runtime jobs depending on status (`finished` and/or `failed`). | None |
| `components.reana_workflow_controller.environment.REANA_JOB_STATUS_CONSUMER_PREFETCH_COUNT` | Define max number of unacknowledged deliveries that are permitted on `jobs-status` queue consumer. | 10 |
| `components.reana_workflow_engine_cwl.image` | [REANA-Workflow-Engine-CWL image](https://hub.docker.com/r/reanahub/reana-workflow-engine-cwl) to use | `reanahub/reana-workflow-engine-cwl:<chart-release-version>` |
| `components.reana_workflow_engine_serial.image` | [REANA-Workflow-Engine-Serial image](https://hub.docker.com/r/reanahub/reana-workflow-engine-serial) to use | `reanahub/reana-workflow-engine-serial:<chart-release-version>` |
| `components.reana_workflow_engine_yadage.image` | [REANA-Workflow-Engine-Yadage image](https://hub.docker.com/r/reanahub/reana-workflow-engine-yadage) to use | `reanahub/reana-workflow-engine-yadage:<chart-release-version>` |
| `components.reana_workflow_engine_snakemake.image` | [REANA-Workflow-Engine-Snakemake image](https://hub.docker.com/r/reanahub/reana-workflow-engine-snakemake) to use | `reanahub/reana-workflow-engine-snakemake:<chart-release-version>` |
| `components.reana_workflow_engine_cwl.image` | [REANA-Workflow-Engine-CWL image](https://hub.docker.com/r/reanahub/reana-workflow-engine-cwl) to use | `docker.io/reanahub/reana-workflow-engine-cwl:<chart-release-version>` |
| `components.reana_workflow_engine_serial.image` | [REANA-Workflow-Engine-Serial image](https://hub.docker.com/r/reanahub/reana-workflow-engine-serial) to use | `docker.io/reanahub/reana-workflow-engine-serial:<chart-release-version>` |
| `components.reana_workflow_engine_yadage.image` | [REANA-Workflow-Engine-Yadage image](https://hub.docker.com/r/reanahub/reana-workflow-engine-yadage) to use | `docker.io/reanahub/reana-workflow-engine-yadage:<chart-release-version>` |
| `components.reana_workflow_engine_snakemake.image` | [REANA-Workflow-Engine-Snakemake image](https://hub.docker.com/r/reanahub/reana-workflow-engine-snakemake) to use | `docker.io/reanahub/reana-workflow-engine-snakemake:<chart-release-version>` |
| `compute_backends` | List of supported compute backends (kubernetes, htcondorcern, slurmcern) | "kubernetes" |
| `db_env_config.REANA_DB_HOST` | Environment variable to connect to external databases | `<chart-release-name>-db` |
| `db_env_config.REANA_DB_NAME` | Environment variable to connect to external databases | reana |
Expand Down Expand Up @@ -127,4 +127,4 @@ This Helm automatically prefixes all names using the release name to avoid colli
| `workspaces.retention_rules.cronjob_schedule` | Cron format string describing how often pending retention rules should be applied. | "0 2 * * *" |
| `workspaces.paths` | List of additional workspace paths as strings. Each mount string is composed by a key `hostPath`(path to the directory to be mounted from the Kubernetes nodes) and a cluster_pod_mountpath (path inside the cluster containers where the `mountPath` will be mounted) e.g. `hostPath:mountPath`. The first value listed will be the default workspace root path. Any POSIX filesystem mounted on cluster nodes is supported | None |
| `interactive_sessions.cronjob_schedule` | Cron format string describing how often interactive session cleanup should be performed. | "0 3 * * *" |
| `interactive_sessions.maximum_inactivity_period` | Set a limit in days for the maximum inactivity period of interactive sessions. After this period interactive sessions will be automatically closed. To disable autoclosure and allow interactive sessions to run forever, use value "forever". | forever |
| `interactive_sessions.maximum_inactivity_period` | Set a limit in days for the maximum inactivity period of interactive sessions. After this period interactive sessions will be automatically closed. To disable autoclosure and allow interactive sessions to run forever, use value "forever". | forever |
2 changes: 1 addition & 1 deletion helm/reana/templates/reana-cache.yaml
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Expand Up @@ -30,7 +30,7 @@ spec:
spec:
containers:
- name: cache
image: redis:5.0.5
image: docker.io/library/redis:5.0.5
ports:
- containerPort: 6379
{{- if .Values.node_label_infrastructure }}
Expand Down
2 changes: 1 addition & 1 deletion helm/reana/templates/reana-db.yaml
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Expand Up @@ -31,7 +31,7 @@ spec:
spec:
containers:
- name: db
image: postgres:12.13
image: docker.io/library/postgres:12.13
args:
- -c
- max_connections=300
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2 changes: 1 addition & 1 deletion helm/reana/templates/reana-mail.yaml
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Expand Up @@ -38,7 +38,7 @@ spec:
spec:
containers:
- name: maildev
image: maildev/maildev:1.1.0
image: docker.io/maildev/maildev:1.1.0
imagePullPolicy: IfNotPresent
ports:
- containerPort: 80
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2 changes: 1 addition & 1 deletion helm/reana/templates/reana-wdb.yaml
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Expand Up @@ -37,7 +37,7 @@ spec:
spec:
containers:
- name: wdb
image: kozea/wdb:3.2.5
image: docker.io/kozea/wdb:3.2.5
imagePullPolicy: IfNotPresent
ports:
- containerPort: 1984
Expand Down
18 changes: 9 additions & 9 deletions helm/reana/values.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -76,12 +76,12 @@ components:
docs_url: https://docs.reana.io
forum_url: https://forum.reana.io
imagePullPolicy: IfNotPresent
image: reanahub/reana-ui:0.9.1-alpha.3
image: docker.io/reanahub/reana-ui:0.9.1-alpha.3
reana_db:
enabled: true
reana_server:
imagePullPolicy: IfNotPresent
image: reanahub/reana-server:0.9.1-alpha.3
image: docker.io/reanahub/reana-server:0.9.1-alpha.3
environment:
REANA_MAX_CONCURRENT_BATCH_WORKFLOWS: 30
REANA_SCHEDULER_REQUEUE_SLEEP: 15
Expand All @@ -100,23 +100,23 @@ components:
log_5xx: true
reana_workflow_controller:
imagePullPolicy: IfNotPresent
image: reanahub/reana-workflow-controller:0.9.1-alpha.2
image: docker.io/reanahub/reana-workflow-controller:0.9.1-alpha.2
environment:
SHARED_VOLUME_PATH: /var/reana
REANA_JOB_STATUS_CONSUMER_PREFETCH_COUNT: 10
reana_workflow_engine_cwl:
image: reanahub/reana-workflow-engine-cwl:0.9.1-alpha.1
image: docker.io/reanahub/reana-workflow-engine-cwl:0.9.1-alpha.1
reana_workflow_engine_yadage:
image: reanahub/reana-workflow-engine-yadage:0.9.1-alpha.1
image: docker.io/reanahub/reana-workflow-engine-yadage:0.9.1-alpha.1
reana_workflow_engine_serial:
image: reanahub/reana-workflow-engine-serial:0.9.1-alpha.1
image: docker.io/reanahub/reana-workflow-engine-serial:0.9.1-alpha.1
reana_workflow_engine_snakemake:
image: reanahub/reana-workflow-engine-snakemake:0.9.1-alpha.1
image: docker.io/reanahub/reana-workflow-engine-snakemake:0.9.1-alpha.1
reana_job_controller:
image: reanahub/reana-job-controller:0.9.1-alpha.2
image: docker.io/reanahub/reana-job-controller:0.9.1-alpha.2
reana_message_broker:
imagePullPolicy: IfNotPresent
image: reanahub/reana-message-broker:0.9.1-alpha.1
image: docker.io/reanahub/reana-message-broker:0.9.1-alpha.1

notifications:
enabled: false
Expand Down
30 changes: 15 additions & 15 deletions reana/config.py
Original file line number Diff line number Diff line change
Expand Up @@ -213,39 +213,39 @@

DOCKER_PREFETCH_IMAGES = {
"reana": [
"postgres:12.13",
"kozea/wdb:3.2.5",
"maildev/maildev:1.1.0",
"redis:5.0.5",
"docker.io/library/postgres:12.13",
"docker.io/kozea/wdb:3.2.5",
"docker.io/maildev/maildev:1.1.0",
"docker.io/library/redis:5.0.5",
],
"reana-demo-helloworld": [
"python:2.7-slim",
"docker.io/library/python:2.7-slim",
],
"reana-demo-worldpopulation": [
"reanahub/reana-env-jupyter:2.0.0",
"docker.io/reanahub/reana-env-jupyter:2.0.0",
],
"reana-demo-root6-roofit": [
"reanahub/reana-env-root6:6.18.04",
"docker.io/reanahub/reana-env-root6:6.18.04",
],
"reana-demo-atlas-recast": [
"reanahub/reana-demo-atlas-recast-eventselection:1.0",
"reanahub/reana-demo-atlas-recast-statanalysis:1.0",
"docker.io/reanahub/reana-demo-atlas-recast-eventselection:1.0",
"docker.io/reanahub/reana-demo-atlas-recast-statanalysis:1.0",
],
"reana-demo-bsm-search": [
"reanahub/reana-demo-bsm-search:1.0.0",
"reanahub/reana-env-root6:6.18.04",
"docker.io/reanahub/reana-demo-bsm-search:1.0.0",
"docker.io/reanahub/reana-env-root6:6.18.04",
],
"reana-demo-cms-h4l": [
"cmsopendata/cmssw_5_3_32",
"docker.io/cmsopendata/cmssw_5_3_32",
],
"reana-demo-cms-dimuon-mass-spectrum": [
"cmsopendata/cmssw_5_3_32",
"docker.io/cmsopendata/cmssw_5_3_32",
],
"reana-demo-alice-pt-analysis": [
"reanahub/reana-env-aliphysics:vAN-20180614-1",
"docker.io/reanahub/reana-env-aliphysics:vAN-20180614-1",
],
"reana-demo-alice-lego-train-test-run": [
"reanahub/reana-env-aliphysics:vAN-20180614-1",
"docker.io/reanahub/reana-env-aliphysics:vAN-20180614-1",
],
}
"""Images to be prefetched depending on the REANA demo to be executed."""
Expand Down
11 changes: 9 additions & 2 deletions reana/reana_dev/cluster.py
Original file line number Diff line number Diff line change
Expand Up @@ -157,10 +157,17 @@ def add_volume_mounts(node):
"podSubnet": "192.168.0.0/16",
}

cluster_create = "cat <<EOF | kind create cluster --config=-\n{cluster_config}\nEOF"
cluster_create = cluster_create.format(cluster_config=yaml.dump(cluster_config))
# detect user container technology (Docker vs Podman)
kind_provider = ""
docker_version_output = run_command("docker version", return_output=True)
if docker_version_output and "Podman Engine" in docker_version_output:
kind_provider = "KIND_EXPERIMENTAL_PROVIDER=podman"

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# create cluster
cluster_create = "cat <<EOF | {kind_provider} kind create cluster --config=-\n{cluster_config}\nEOF"
cluster_create = cluster_create.format(

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kind_provider=kind_provider, cluster_config=yaml.dump(cluster_config)
)
run_command(cluster_create, "reana")

# pull Docker images
Expand Down
4 changes: 3 additions & 1 deletion reana/reana_dev/docker.py
Original file line number Diff line number Diff line change
Expand Up @@ -158,7 +158,9 @@ def docker_build(
cmd += " --no-cache"
if quiet or parallel > 1:
cmd += " --quiet"
component_version_tag = "{0}/{1}:{2}".format(user, component, component_tag)
component_version_tag = "docker.io/{0}/{1}:{2}".format(

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user, component, component_tag
)
cmd += " -t {0} .".format(component_version_tag)
commands.append((_run_command, (cmd, component)))
built_components_versions_tags.append(component_version_tag)
Expand Down
4 changes: 2 additions & 2 deletions reana/reana_dev/kind.py
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
#
# This file is part of REANA.
# Copyright (C) 2020, 2021 CERN.
# Copyright (C) 2020, 2021, 2023 CERN.
#
# REANA is free software; you can redistribute it and/or modify it
# under the terms of the MIT License; see LICENSE file for more details.
Expand Down Expand Up @@ -79,7 +79,7 @@ def kind_load_docker_image(user, component, node, exclude_components): # noqa:
cmd = f"{cmd} --nodes {','.join(node)}"
run_command(cmd, component)
elif is_component_dockerised(component):
cmd = "kind load docker-image {0}/{1}".format(user, component)
cmd = "kind load docker-image docker.io/{0}/{1}".format(user, component)

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if node:
cmd = f"{cmd} --nodes {','.join(node)}"
run_command(cmd, component)
Expand Down
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