Merge pull request #58 from plantbreeding/Isabelle-inrae-patch-1

[ci skip]

This build is based on
f87c419.

This commit was created by the following CI build and job:
https://github.com/plantbreeding/BrAPI-Manuscript2/commit/f87c4197b7cb26dfecb51960773f70097e1bdfd5/checks
https://github.com/plantbreeding/BrAPI-Manuscript2/actions/runs/9811417045

README.md

@@ -1,7 +1,7 @@
 # Output directory containing the formatted manuscript
 
 The [`gh-pages`](https://github.com/plantbreeding/BrAPI-Manuscript2/tree/gh-pages) branch hosts the contents of this directory at <https://plantbreeding.github.io/BrAPI-Manuscript2/>.
-The permalink for this webpage version is <https://plantbreeding.github.io/BrAPI-Manuscript2/v/cc62dfe56f8a0c0a8bce2ba4927155bfa51d2e5e/>.
+The permalink for this webpage version is <https://plantbreeding.github.io/BrAPI-Manuscript2/v/f87c4197b7cb26dfecb51960773f70097e1bdfd5/>.
 To redirect to the permalink for the latest manuscript version at anytime, use the link <https://plantbreeding.github.io/BrAPI-Manuscript2/v/freeze/>.
 
 ## Files
@@ -35,4 +35,4 @@ Verifying timestamps with the `ots verify` command requires running a local bitc
 ## Source
 
 The manuscripts in this directory were built from
-[`cc62dfe56f8a0c0a8bce2ba4927155bfa51d2e5e`](https://github.com/plantbreeding/BrAPI-Manuscript2/commit/cc62dfe56f8a0c0a8bce2ba4927155bfa51d2e5e).
+[`f87c4197b7cb26dfecb51960773f70097e1bdfd5`](https://github.com/plantbreeding/BrAPI-Manuscript2/commit/f87c4197b7cb26dfecb51960773f70097e1bdfd5).

index.html

@@ -15,9 +15,11 @@
   <meta name="author" content="Jan Erik Backlund" />
   <meta name="author" content="Aldrin Batac" />
   <meta name="author" content="Sebastian Beier" />
+  <meta name="author" content="Gabriel Besombes" />
   <meta name="author" content="Alice Boizet" />
   <meta name="author" content="Matthijs Brouwer" />
   <meta name="author" content="Terry Casstevens" />
+  <meta name="author" content="Arnaud Charleroy" />
   <meta name="author" content="Keo Corak" />
   <meta name="author" content="Chaney Courtney" />
   <meta name="author" content="Mariano Crimi" />
@@ -52,6 +54,7 @@
   <meta name="author" content="Iain Milne" />
   <meta name="author" content="Lukas A. Mueller" />
   <meta name="author" content="Moses Nderitu" />
+  <meta name="author" content="Pascal Neveu" />
   <meta name="author" content="Tim Parsons" />
   <meta name="author" content="Nick Palladino" />
   <meta name="author" content="Cyril Pommier" />
@@ -66,6 +69,7 @@
   <meta name="author" content="Becky Smith" />
   <meta name="author" content="Nahuel Soldevilla" />
   <meta name="author" content="Kauê de Sousa" />
+  <meta name="author" content="Anne Tireau" />
   <meta name="author" content="Clarysabel Tovar" />
   <meta name="author" content="Grzegorz Uszynski" />
   <meta name="author" content="Vivian Bass Vega" />
@@ -119,8 +123,8 @@
   <meta name="dc.date" content="2024-07-05" />
   <meta name="citation_publication_date" content="2024-07-05" />
   <meta property="article:published_time" content="2024-07-05" />
-  <meta name="dc.modified" content="2024-07-05T16:53:55+00:00" />
-  <meta property="article:modified_time" content="2024-07-05T16:53:55+00:00" />
+  <meta name="dc.modified" content="2024-07-05T16:54:59+00:00" />
+  <meta property="article:modified_time" content="2024-07-05T16:54:59+00:00" />
   <meta name="dc.language" content="en-US" />
   <meta name="citation_language" content="en-US" />
   <meta name="dc.relation.ispartof" content="Manubot" />
@@ -145,7 +149,7 @@
   <meta name="citation_author_institution" content="Université Paris-Saclay, INRAE, URGI, Versailles, France" />
   <meta name="citation_author_orcid" content="0000-0001-9356-4072" />
   <meta name="citation_author" content="Isabelle Alic" />
-  <meta name="citation_author_institution" content="INRAE" />
+  <meta name="citation_author_institution" content="MISTEA, University of Montpellier, INRAE, Institut Agro, Montpellier, France" />
   <meta name="citation_author_orcid" content="0000-0002-8961-6068" />
   <meta name="citation_author" content="Khaled Al-Shamaa" />
   <meta name="citation_author_institution" content="ICARDA" />
@@ -161,6 +165,8 @@
   <meta name="citation_author_institution" content="Institute of Bio- and Geosciences (IBG-4: Bioinformatics), CEPLAS, Forschungszentrum Jülich GmbH, Wilhelm Johnen Straße, 52428 Jülich, Germany" />
   <meta name="citation_author_institution" content="Bioeconomy Science Center (BioSC), Forschungszentrum Jülich GmbH, 52428 Jülich, Germany" />
   <meta name="citation_author_orcid" content="0000-0002-2177-8781" />
+  <meta name="citation_author" content="Gabriel Besombes" />
+  <meta name="citation_author_institution" content="MISTEA, University of Montpellier, INRAE, Institut Agro, Montpellier, France" />
   <meta name="citation_author" content="Alice Boizet" />
   <meta name="citation_author_institution" content="CIRAD, UMR AGAP Institut, Montpellier, France." />
   <meta name="citation_author_institution" content="AGAP Institut, CIRAD, INRAE, Institut Agro, Université de Montpellier, Montpellier, France." />
@@ -171,6 +177,9 @@
   <meta name="citation_author" content="Terry Casstevens" />
   <meta name="citation_author_institution" content="Buckler Lab and Institute for Genomic Diversity, Cornell University" />
   <meta name="citation_author_orcid" content="0000-0001-7602-0487" />
+  <meta name="citation_author" content="Arnaud Charleroy" />
+  <meta name="citation_author_institution" content="MISTEA, University of Montpellier, INRAE, Institut Agro, Montpellier, France" />
+  <meta name="citation_author_orcid" content="0009-0009-7575-3617" />
   <meta name="citation_author" content="Keo Corak" />
   <meta name="citation_author_institution" content="USDA-ARS Genomics and Bioinformatics Research Unit" />
   <meta name="citation_author" content="Chaney Courtney" />
@@ -261,6 +270,9 @@
   <meta name="citation_author_orcid" content="0000-0001-8640-1750" />
   <meta name="citation_author" content="Moses Nderitu" />
   <meta name="citation_author_institution" content="SEQART AFRICA" />
+  <meta name="citation_author" content="Pascal Neveu" />
+  <meta name="citation_author_institution" content="MISTEA, University of Montpellier, INRAE, Institut Agro, Montpellier, France" />
+  <meta name="citation_author_orcid" content="0000-0003-4189-7793" />
   <meta name="citation_author" content="Tim Parsons" />
   <meta name="citation_author_institution" content="Breeding Insight, Cornell University" />
   <meta name="citation_author_orcid" content="0000-0001-6209-2455" />
@@ -305,6 +317,9 @@
   <meta name="citation_author" content="Kauê de Sousa" />
   <meta name="citation_author_institution" content="Digital Inclusion, Bioversity International, Montpellier, France" />
   <meta name="citation_author_orcid" content="0000-0002-7571-7845" />
+  <meta name="citation_author" content="Anne Tireau" />
+  <meta name="citation_author_institution" content="MISTEA, University of Montpellier, INRAE, Institut Agro, Montpellier, France" />
+  <meta name="citation_author_orcid" content="0000-0001-8501-6922" />
   <meta name="citation_author" content="Clarysabel Tovar" />
   <meta name="citation_author_institution" content="Integrated Breeding Platform" />
   <meta name="citation_author_institution" content="Leafnode LLC" />
@@ -325,9 +340,9 @@
   <meta name="citation_fulltext_html_url" content="https://plantbreeding.github.io/BrAPI-Manuscript2/" />
   <meta name="citation_pdf_url" content="https://plantbreeding.github.io/BrAPI-Manuscript2/manuscript.pdf" />
   <link rel="alternate" type="application/pdf" href="https://plantbreeding.github.io/BrAPI-Manuscript2/manuscript.pdf" />
-  <link rel="alternate" type="text/html" href="https://plantbreeding.github.io/BrAPI-Manuscript2/v/cc62dfe56f8a0c0a8bce2ba4927155bfa51d2e5e/" />
-  <meta name="manubot_html_url_versioned" content="https://plantbreeding.github.io/BrAPI-Manuscript2/v/cc62dfe56f8a0c0a8bce2ba4927155bfa51d2e5e/" />
-  <meta name="manubot_pdf_url_versioned" content="https://plantbreeding.github.io/BrAPI-Manuscript2/v/cc62dfe56f8a0c0a8bce2ba4927155bfa51d2e5e/manuscript.pdf" />
+  <link rel="alternate" type="text/html" href="https://plantbreeding.github.io/BrAPI-Manuscript2/v/f87c4197b7cb26dfecb51960773f70097e1bdfd5/" />
+  <meta name="manubot_html_url_versioned" content="https://plantbreeding.github.io/BrAPI-Manuscript2/v/f87c4197b7cb26dfecb51960773f70097e1bdfd5/" />
+  <meta name="manubot_pdf_url_versioned" content="https://plantbreeding.github.io/BrAPI-Manuscript2/v/f87c4197b7cb26dfecb51960773f70097e1bdfd5/manuscript.pdf" />
   <meta property="og:type" content="article" />
   <meta property="twitter:card" content="summary_large_image" />
   <link rel="icon" type="image/png" sizes="192x192" href="https://manubot.org/favicon-192x192.png" />
@@ -344,9 +359,9 @@ <h1 class="title">BrAPI Success Stories</h1>
 </header>
 <p><small><em>
 This manuscript
-(<a href="https://plantbreeding.github.io/BrAPI-Manuscript2/v/cc62dfe56f8a0c0a8bce2ba4927155bfa51d2e5e/">permalink</a>)
+(<a href="https://plantbreeding.github.io/BrAPI-Manuscript2/v/f87c4197b7cb26dfecb51960773f70097e1bdfd5/">permalink</a>)
 was automatically generated
-from <a href="https://github.com/plantbreeding/BrAPI-Manuscript2/tree/cc62dfe56f8a0c0a8bce2ba4927155bfa51d2e5e">plantbreeding/BrAPI-Manuscript2@cc62dfe</a>
+from <a href="https://github.com/plantbreeding/BrAPI-Manuscript2/tree/f87c4197b7cb26dfecb51960773f70097e1bdfd5">plantbreeding/BrAPI-Manuscript2@f87c419</a>
 on July 5, 2024.
 </em></small></p>
 <h2 id="authors">Authors</h2>
@@ -407,7 +422,7 @@ <h2 id="authors">Authors</h2>
 <a href="https://github.com/Isabelle-inrae">Isabelle-inrae</a>
 <br>
 <small>
-INRAE
+MISTEA, University of Montpellier, INRAE, Institut Agro, Montpellier, France
 · Funded by This work was supported by the Agence Nationale de la Recherche, programme Investissements d’avenir, ANR-11-INBS-0012 (Phenome)
 </small></p></li>
 <li><p><strong>Khaled Al-Shamaa</strong>
@@ -445,6 +460,15 @@ <h2 id="authors">Authors</h2>
 <small>
 Institute of Bio- and Geosciences (IBG-4: Bioinformatics), CEPLAS, Forschungszentrum Jülich GmbH, Wilhelm Johnen Straße, 52428 Jülich, Germany; Bioeconomy Science Center (BioSC), Forschungszentrum Jülich GmbH, 52428 Jülich, Germany
 </small></p></li>
+<li><p><strong>Gabriel Besombes</strong>
+<br>
+· <img src="images/github.svg" class="inline_icon" width="16" height="16" alt="GitHub icon" />
+<a href="https://github.com/Gabriel-Besombes">Gabriel-Besombes</a>
+<br>
+<small>
+MISTEA, University of Montpellier, INRAE, Institut Agro, Montpellier, France
+· Funded by This work was supported by the Agence Nationale de la Recherche, programme Investissements d’avenir, ANR-11-INBS-0012 (Phenome)
+</small></p></li>
 <li><p><strong>Alice Boizet</strong>
 <br>
 <img src="images/orcid.svg" class="inline_icon" width="16" height="16" alt="ORCID icon" />
@@ -475,6 +499,17 @@ <h2 id="authors">Authors</h2>
 <small>
 Buckler Lab and Institute for Genomic Diversity, Cornell University
 </small></p></li>
+<li><p><strong>Arnaud Charleroy</strong>
+<br>
+<img src="images/orcid.svg" class="inline_icon" width="16" height="16" alt="ORCID icon" />
+<a href="https://orcid.org/0009-0009-7575-3617">0009-0009-7575-3617</a>
+· <img src="images/github.svg" class="inline_icon" width="16" height="16" alt="GitHub icon" />
+<a href="https://github.com/niio972">niio972</a>
+<br>
+<small>
+MISTEA, University of Montpellier, INRAE, Institut Agro, Montpellier, France
+· Funded by This work was supported by the Agence Nationale de la Recherche, programme Investissements d’avenir, ANR-11-INBS-0012 (Phenome)
+</small></p></li>
 <li><p><strong>Keo Corak</strong>
 <br>
 · <img src="images/github.svg" class="inline_icon" width="16" height="16" alt="GitHub icon" />
@@ -740,6 +775,17 @@ <h2 id="authors">Authors</h2>
 <small>
 SEQART AFRICA
 </small></p></li>
+<li><p><strong>Pascal Neveu</strong>
+<br>
+<img src="images/orcid.svg" class="inline_icon" width="16" height="16" alt="ORCID icon" />
+<a href="https://orcid.org/0000-0003-4189-7793">0000-0003-4189-7793</a>
+· <img src="images/github.svg" class="inline_icon" width="16" height="16" alt="GitHub icon" />
+<a href="https://github.com/pascalneveu">pascalneveu</a>
+<br>
+<small>
+MISTEA, University of Montpellier, INRAE, Institut Agro, Montpellier, France
+· Funded by This work was supported by the Agence Nationale de la Recherche, programme Investissements d’avenir, ANR-11-INBS-0012 (Phenome)
+</small></p></li>
 <li><p><strong>Tim Parsons</strong>
 <br>
 <img src="images/orcid.svg" class="inline_icon" width="16" height="16" alt="ORCID icon" />
@@ -871,6 +917,17 @@ <h2 id="authors">Authors</h2>
 <small>
 Digital Inclusion, Bioversity International, Montpellier, France
 </small></p></li>
+<li><p><strong>Anne Tireau</strong>
+<br>
+<img src="images/orcid.svg" class="inline_icon" width="16" height="16" alt="ORCID icon" />
+<a href="https://orcid.org/0000-0001-8501-6922">0000-0001-8501-6922</a>
+· <img src="images/github.svg" class="inline_icon" width="16" height="16" alt="GitHub icon" />
+<a href="https://github.com/annetireau">annetireau</a>
+<br>
+<small>
+MISTEA, University of Montpellier, INRAE, Institut Agro, Montpellier, France
+· Funded by This work was supported by the Agence Nationale de la Recherche, programme Investissements d’avenir, ANR-11-INBS-0012 (Phenome)
+</small></p></li>
 <li><p><strong>Clarysabel Tovar</strong>
 <br>
 <small>