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    16 repositories

    • rhostral_rhinal_hub_scrnaseq

      Public
      notebooks for the scrnaseq analysis to accompany Fitzpatrick 2023
      0•0•0•0•Updated Jan 23, 2024Jan 23, 2024

    • clatworthylab.github.io

      Public
      Lab website for Clatworthy Lab using a minimalist Jekyll theme (Millenial)
      CSS
      •
      MIT License
      •908•0•0•0•Updated Apr 17, 2023Apr 17, 2023

    • dandelion

      Public
      dandelion - A single cell BCR-seq analysis package for 10X Chromium 5' data
      Jupyter Notebook
      •
      GNU Affero General Public License v3.0
      •25•5•0•0•Updated Apr 13, 2023Apr 13, 2023

    • kttools

      Public
      Kelvin's python tool module
      Python
      •
      MIT License
      •3•0•0•0•Updated Apr 12, 2023Apr 12, 2023

    • cram2fastq

      Public
      Converting crams to fastq from irods
      Python
      •0•1•0•0•Updated Mar 9, 2023Mar 9, 2023

    • clatworthylab_genesets

      Public
      Gene sets frequently used in Clatworthy lab.
      1•0•0•0•Updated Nov 10, 2022Nov 10, 2022

    • bulkBCRseq

      Public
      Bulk BCR seq processing pipeline. Reimplementation of original package provided by Dr. Rachael Bashford-Rogers (Oxford)
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Sep 28, 2022Sep 28, 2022

    • ktplots

      Public
      Some tools for plotting single-cell data
      R
      •
      MIT License
      •32•1•0•0•Updated Sep 18, 2022Sep 18, 2022

    • COVID_analysis

      Public
      scRNAseq analyses for SARS-CoV-2 infection (COVID-19)
      0•0•0•0•Updated Sep 1, 2022Sep 1, 2022

    • tools

      Public
      Python
      •1•0•0•0•Updated Jan 18, 2022Jan 18, 2022

    • prostateimmuneatlas

      Public
      single-cell RNAseq analysis notebooks accompanying Tuong et al.
      Jupyter Notebook
      •3•6•0•0•Updated Dec 9, 2021Dec 9, 2021

    • Matt-C

      Public
      Matt Coates
      Jupyter Notebook
      •0•0•1•0•Updated Dec 8, 2021Dec 8, 2021

    • Formaldehyde_TCNER_Kidney_scRNAseq

      Public
      Analysis notebooks for scRNA-seq analysis of Formaldehyde-related TC-NER in mouse kidneys
      Jupyter Notebook
      •0•0•0•0•Updated Nov 25, 2021Nov 25, 2021

    • bowerbird

      Public
      A single-cell package for Functional Annotation + gene Module Usage
      R
      •0•1•1•0•Updated Nov 22, 2021Nov 22, 2021

    • LILACS_scRNAseq

      Public
      Notebooks used for analysis of LILACS scRNAseq.
      Jupyter Notebook
      •0•0•0•0•Updated Nov 22, 2021Nov 22, 2021

    • somerepo

      Public
      Notebooks used for analysis of LILACS scRNAseq.
      Jupyter Notebook
      •0•0•0•0•Updated Oct 20, 2021Oct 20, 2021