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scRNAseq analyses for SARS-CoV-2 infection (COVID-19)

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COVID_analysis

Collated scripts and data for Clatworthy Lab's contributions towards scRNAseq analyses for SARS-CoV-2 infection (COVID-19).

Projects

  1. COVIDPBMC - collaborative scRNAseq project between Ncl, Sanger/UCL and UCAM. Our lab was in charge of the B cell analysis. The BCR airr files are available in this repository: scbcr_airr.tsv.bz2

  2. COVID_collab_Liu2021_Cell - scBCRseq analysis for Dr. John Tsang's team at NIH (https://linkinghub.elsevier.com/retrieve/pii/S0092867421001689).

  3. COVID_NALT - Clatworthy lab scRNAseq project using paired NALT and blood samples over the COVID-19 disease course as a natural experiment into the effects of a viral stimulus on mucosal surface and secondary lymphoid responses.

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