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Add ensembling methods for tiling to Anomalib #1226

Merged
merged 242 commits into from
Oct 24, 2024
Merged

Add ensembling methods for tiling to Anomalib #1226

merged 242 commits into from
Oct 24, 2024

Commits on Mar 18, 2023

  1. Fixed broken links in readme

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    blaz-r authored Mar 18, 2023
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  2. Fixed inference command in readme

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    blaz-r authored Mar 18, 2023
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Commits on Mar 23, 2023

  1. Merge branch 'openvinotoolkit:main' into main

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    blaz-r authored Mar 23, 2023
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Commits on Mar 28, 2023

  1. Merge branch 'openvinotoolkit:main' into main

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Commits on Apr 19, 2023

  1. Merge branch 'openvinotoolkit:main' into main

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Commits on Jun 22, 2023

  1. Merge branch 'openvinotoolkit:main' into main

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  2. Add tiling for ensemble

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    blaz-r committed Jun 22, 2023
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Commits on Jun 24, 2023

  1. Add tests for tiling for ensemble

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    blaz-r committed Jun 24, 2023
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Commits on Jun 25, 2023

  1. Moved ensemble tiler to separate file

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    blaz-r committed Jun 25, 2023
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Commits on Jun 26, 2023

  1. Modify padim config for ensemble

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    blaz-r committed Jun 26, 2023
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  2. Add tiling to dataset

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    blaz-r committed Jun 26, 2023
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Commits on Jun 28, 2023

  1. Revert changes to train

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    blaz-r committed Jun 28, 2023
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  2. Add tiling to collate fn

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    blaz-r committed Jun 28, 2023
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Commits on Jun 29, 2023

  1. Fix tiling in collate

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    blaz-r committed Jun 29, 2023
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Commits on Jun 30, 2023

  1. Merge branch 'openvinotoolkit:main' into ensemble

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    blaz-r authored Jun 30, 2023
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  2. Change val. function to protected

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    blaz-r committed Jun 30, 2023
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  3. Add tile number logic

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    blaz-r committed Jun 30, 2023
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  4. Move collate fn to separate file

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    blaz-r committed Jun 30, 2023
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  5. Update tests for tiler

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    blaz-r committed Jun 30, 2023
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  6. Add training loop for ensemble

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    blaz-r committed Jun 30, 2023
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Commits on Jul 3, 2023

  1. Add model input size setup

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    blaz-r committed Jul 3, 2023
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  2. Move ens config to separate file

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    blaz-r committed Jul 3, 2023
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  3. Revert mvtec modifications

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    blaz-r committed Jul 3, 2023
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  4. Remove unused imports in mvtec

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    blaz-r committed Jul 3, 2023
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Commits on Jul 4, 2023

  1. Add batch adjustment to untiling

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    blaz-r committed Jul 4, 2023
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  2. Add predict step to ensemble

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    blaz-r committed Jul 4, 2023
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  3. Add comment and docstring to tile joining function

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    blaz-r committed Jul 4, 2023
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Commits on Jul 5, 2023

  1. Move tile joining to separate function

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  2. Add joining for all tiled data

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    blaz-r committed Jul 5, 2023
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  3. Add joining for all box data

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    blaz-r committed Jul 5, 2023
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Commits on Jul 6, 2023

  1. Refactor pred. joining as modular class

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    blaz-r committed Jul 6, 2023
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  2. Fix box joining

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    blaz-r committed Jul 6, 2023
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Commits on Jul 10, 2023

  1. Merge branch 'openvinotoolkit:main' into ensemble

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  2. Add label and score joining

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    blaz-r committed Jul 10, 2023
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  3. Merge remote-tracking branch 'origin/ensemble' into ensemble

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    blaz-r committed Jul 10, 2023
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  4. Add ensemble visualization

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Commits on Jul 11, 2023

  1. Add end of predict hook

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    blaz-r committed Jul 11, 2023
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  2. Add metric computation

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    blaz-r committed Jul 11, 2023
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Commits on Jul 12, 2023

  1. Fix metric thresholds

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    blaz-r committed Jul 12, 2023
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  2. Add removal of individual visualization

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    blaz-r committed Jul 12, 2023
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Commits on Jul 14, 2023

  1. Add demo1 notebook

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Commits on Jul 17, 2023

  1. Add docstrings and cleanup

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Commits on Jul 19, 2023

  1. Add memory benchmark

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    blaz-r committed Jul 19, 2023
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Commits on Jul 20, 2023

  1. Add modular class for storing predictions

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    blaz-r committed Jul 20, 2023
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  2. Add metric to separate class

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    blaz-r committed Jul 20, 2023
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  3. Refactor to support prediction data class

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    blaz-r committed Jul 20, 2023
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  4. Rename predictions class

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    blaz-r committed Jul 20, 2023
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  5. Add filesystem predictions class

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    blaz-r committed Jul 20, 2023
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  6. Merge branch 'openvinotoolkit:main' into ensemble

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    blaz-r authored Jul 20, 2023
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Commits on Jul 21, 2023

  1. Add resized predictions class

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Commits on Jul 22, 2023

  1. Fix joiner for classification task

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    blaz-r committed Jul 22, 2023
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  2. Add page peak to memory benchmark

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    blaz-r committed Jul 22, 2023
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Commits on Jul 25, 2023

  1. Add global stats calculation

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  2. Add docstrings to stats calculation

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    blaz-r committed Jul 25, 2023
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Commits on Jul 26, 2023

  1. Refactor joiner for pipeline

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    blaz-r committed Jul 26, 2023
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  2. Refactor stats into pipeline

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    blaz-r committed Jul 26, 2023
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  3. Refactor metrics as pipeline block

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    blaz-r committed Jul 26, 2023
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  4. Refactor visualization as pipeline block

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    blaz-r committed Jul 26, 2023
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  5. Refactor postprocessing into a pipeline

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    blaz-r committed Jul 26, 2023
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  6. Add normalization and thresholding on joined predictions

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Commits on Jul 27, 2023

  1. Refactor tiler to accept config file

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    blaz-r committed Jul 27, 2023
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  2. Add smoothing of tile joins.

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    blaz-r committed Jul 27, 2023
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  3. Refactor ensemble datamodule preparation

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    blaz-r committed Jul 27, 2023
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Commits on Jul 28, 2023

  1. Remove unused changes in dataloader

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    blaz-r committed Jul 28, 2023
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  2. Fix metric configuration

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    blaz-r committed Jul 28, 2023
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  3. Fix box coordinates in joining

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    blaz-r committed Jul 28, 2023
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  4. Add ensemble callbacks preparation function

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    blaz-r committed Jul 28, 2023
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  5. Fix box prediction bug in postprocess

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    blaz-r committed Jul 28, 2023
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Commits on Jul 31, 2023

  1. Add ensemble params to config

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  2. Refactor postprocessing.

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    blaz-r committed Jul 31, 2023
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Commits on Aug 1, 2023

  1. Refactor post-processing

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    blaz-r committed Aug 1, 2023
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  2. Refactor predictions

    @blaz-r
    blaz-r committed Aug 1, 2023
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  3. Code cleanup

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    blaz-r committed Aug 1, 2023
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  4. Optimize prediction storage

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    blaz-r committed Aug 1, 2023
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  5. Make join smoothing configurable

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    blaz-r committed Aug 1, 2023
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  6. Cleanup before PR

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    blaz-r committed Aug 1, 2023
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  7. Fix stats pipeline

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    blaz-r committed Aug 1, 2023
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Commits on Aug 2, 2023

  1. Fix logging strings

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  2. Fix memory benchmark

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    blaz-r committed Aug 2, 2023
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  3. Fix tiler issues

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    blaz-r committed Aug 2, 2023
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  4. Fix import issues

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    blaz-r committed Aug 2, 2023
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  5. Fix naming in metrics and visualization

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    blaz-r committed Aug 2, 2023
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  6. Fix cyclic import

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  7. Make logging lazy

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  8. Refactor tiler tests

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    blaz-r committed Aug 2, 2023
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  9. Added collate tiling tests

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    blaz-r committed Aug 2, 2023
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  10. Added ensemble helper functions tests

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  11. Refactor for dummy ensemble config

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Commits on Aug 3, 2023

  1. Refactor for dummy base config

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  2. Add tests for prediction storage

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  3. Add tests for prediction joiner

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Commits on Aug 4, 2023

  1. Add tests for visualization

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  2. Fix small issues in tests

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    blaz-r committed Aug 4, 2023
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  3. Add metrics test

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  4. Add post-processing tests

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  5. Fix tiler to work with different instance

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Commits on Aug 5, 2023

  1. Move seed setting inside train loop

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  2. Fix pipeline stats bug

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    blaz-r committed Aug 5, 2023
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  3. Rename ensemble config fixture

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  4. Add pipeline tests

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  5. Fix config in pipeline tests

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  6. Add training script test

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  7. Fix types and docstrings

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    blaz-r committed Aug 5, 2023
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Commits on Aug 7, 2023

  1. Move and rename to tiled_ensemble

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  2. Fix bug in label joining.

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    blaz-r committed Aug 7, 2023
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  3. Remove memory benchmark

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    blaz-r committed Aug 7, 2023
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  4. Cleanup files

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Commits on Aug 8, 2023

  1. Fix metrics setup

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Commits on Aug 10, 2023

  1. Merge branch 'openvinotoolkit:main' into ensemble

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    blaz-r authored Aug 10, 2023
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  2. Rename collate function

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    blaz-r committed Aug 10, 2023
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  3. Add license to test files

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    blaz-r committed Aug 10, 2023
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  4. Rename fixtures

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  5. Add more comments to tiled ensemble training

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  6. Add start of training log message

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  7. Refactor tiler to have explicit arguments

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  8. Refactor pred. storage to have explicit arguments

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  9. Refactor metrics to have explicit arguments

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  10. Refactor visualization to have explicit arguments

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  11. Refactor post-processing to have explicit arguments

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  12. Sort imports

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  13. Add test ensemble script

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  14. Fix join smoothing bug

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  1. Add more documentation to doc-strings

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  2. Merge branch 'openvinotoolkit:main' into ensemble

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  3. Remove unused import

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  4. Add brief tiled ensemble documentation

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  1. Merge branch 'openvinotoolkit:main' into ensemble

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  1. Merge branch 'openvinotoolkit:main' into ensemble

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  2. Update typehints

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  3. Make training args more clear

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  4. Revert addition of no threshold option.

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  5. Refactor normalization and threshold config

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  6. Remove tiled ensemble from docs index

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  7. Add comments to clarify parts of ensemble config

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  8. Improve ensemble config comments

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  9. Add num_tiles attribute to tiler.

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  10. Fix metrics process docstring

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  11. Merge branch 'openvinotoolkit:main' into ensemble

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  12. Fix visualization bug and cover with test

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  14. Replace strings with enum

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  15. Improve comments in joiner.

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  16. Fix bug when model doesn't have anomaly maps.

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  17. Improve docstrings (types, clarify).

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  18. Fix visualization tests

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  1. Fix dict membership checks

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  1. Add saving of ensemble config file

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  2. Update test script args

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  3. Cover test script with tests

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  4. Update export warning

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  1. Fix case when no test or val data

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  2. Improve documentation images

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  3. Add images for documentation

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  4. Add codacy suggestion

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  5. Merge branch 'openvinotoolkit:main' into ensemble

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  1. Merge branch 'main' into ensemble

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  2. Refactor joiner to single class

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  3. Refactor storage names and config

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  4. Update normalization and threshold stage names

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  5. Merge remote-tracking branch 'origin/ensemble' into ensemble

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  1. Merge branch 'openvinotoolkit:main' into ensemble

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  1. Merge branch 'main' into ensemble

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  1. Merge branch 'main' into ensemble 

    # Conflicts:
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  1. Merge remote-tracking branch 'origin/main' into ensemble 

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# Conflicts:
#	src/anomalib/data/base/datamodule.py
#	src/anomalib/models/components/base/anomaly_module.py
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  1. Add transforms independent input size to models 

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  2. Make collate function a datamodule attribute 

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  3. Refactor tiled ensemble train into pipeline step 

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  1. Refactor tiled ensemble prediction into pipeline step 

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  2. Refactor tiled ensemble merging into pipeline step 

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  1. Refactor tiled ensemble seam smoothing into pipeline step 

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  2. Refactor tiled stats calculation into pipeline step 

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  3. Fix ckpt loading when predicting on test set. 

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  4. Add logging and add tqdm to pipeline steps. 

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  5. Refactor normalization pipeline step 

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  1. Refactor thresholding into new pipeline job

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  2. Fix transforms issue when predicting with dataloader

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  3. Add visualization as new pipeline step

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  4. Add metrics as new pipeline step

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  5. Format the code and address some lint problems 

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  6. Add code to skip test if test split is none 

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  7. Add accelerator to metrics and smoothing 

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  8. Make threshold acq helper function and add to threshold to metrics 

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  9. Make a separate test pipeline 

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  10. Restructure tiled ensemble files into directories 

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  11. Pipeline code cleanup 

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Commits on Aug 2, 2024

  1. Merge branch 'openvinotoolkit:main' into ensemble

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  2. Remove old tiled ensemble files 

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  3. Remove old post processing files 

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  4. Fix sigma value read in smoothing 

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  1. Merge branch 'openvinotoolkit:main' into ensemble

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  2. Update stats calc and normalization 

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  3. Update args naming convention 

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  4. Refactor code for nice config 

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  1. Update docs structure for new system 

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  1. Cleanup train code 

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  1. Merge branch 'openvinotoolkit:main' into ensemble

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  2. Fix test script args 

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  3. Update box merging 

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  4. Refactor helper function tests 

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  5. Small changes in helper and engine 

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  6. Refactor merging tests 

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  7. Refactor tiling tests 

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  8. Refactor metrics test 

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  9. Add support for different threshold methods 

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  10. Format tests 

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  1. Merge branch 'openvinotoolkit:main' into ensemble

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  2. Change test to predict 

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  3. Refactor stats calculation tests 

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  4. Refactor prediction data tests 

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  5. Update metrics tests 

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Commits on Oct 5, 2024

  1. Move metrics tests to components 

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  2. Refactor seam smoothing tests 

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  3. Refactor normalization tests 

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  4. Move mock stats to conftest 

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  5. Fix typehints for generator 

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  6. Refactor threshold tests 

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  7. Temporarily disable box minmax 

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  8. Add tiled ensemble integration test 

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  9. Fix normalization tests and add additional merging test 

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  10. Add tile collater tests 

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Commits on Oct 6, 2024

  1. Merge branch 'openvinotoolkit:main' into ensemble

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    blaz-r authored Oct 6, 2024
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  2. Change dataset in tests to dummy 

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  3. Format and fix linter errors 

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  4. Format and some cleanup 

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  5. Rename predict to eval 

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  6. Update docs for refactored version of code 

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Commits on Oct 7, 2024

  1. Cleanup the docs 

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Commits on Oct 14, 2024

  1. Merge branch 'main' into ensemble

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Commits on Oct 22, 2024

  1. Merge branch 'main' into ensemble

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    samet-akcay authored Oct 22, 2024
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  2. Merge branch 'openvinotoolkit:main' into ensemble

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    blaz-r authored Oct 22, 2024
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  3. Update ensemble engine 

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    blaz-r committed Oct 22, 2024
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  4. Remove boxes from pipelines and tests 

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    blaz-r committed Oct 22, 2024
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  5. Fix TODO comment issue 

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    blaz-r committed Oct 22, 2024
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  6. Fix unused model in ens. engine 

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    blaz-r committed Oct 22, 2024
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  7. Fix path case in test 

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    blaz-r committed Oct 22, 2024
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  8. Change temporary dir to project_path 

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    blaz-r committed Oct 22, 2024
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Commits on Oct 23, 2024

  1. Change mvtec to MVTec in test path 

    Signed-off-by: Blaz Rolih <blaz.rolih@gmail.com>
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    blaz-r committed Oct 23, 2024
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