Fixes #2672 - textual and logical defs - parietal cell

[Caroline-99]

• Revised textual defintion and add extra information in the comments section
• Revised logical defs (Added + Updated GO links) + added links to uberon
• Added references

[Caroline-99]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -simple file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-10-18/cl-simple.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-master.owl/cl-simple.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-10-18/cl-simple.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-pr.owl/cl-simple.owl

Ontology imports

Ontology annotations

parietal cell http://purl.obolibrary.org/obo/CL_0000162

Removed

• parietal cell has exact synonym "oxyntic cell"

• parietal cell definition "A large, oval stomach epithelial cell with a central nucleus; source of gastric acid. Secretes HCl."

  • database_cross_reference "GOC:tfm"

  • database_cross_reference "ISBN:0517223651"

Added

• parietal cell has exact synonym "gastric parietal cell"

  • database_cross_reference "PMID:29263912"

• parietal cell comment "Parietal cells have dynamic, actin-supported microvilli that increase in number during active secretion, playing a crucial role in secreting hydrochloric acid and intrinsic factor. The structure and regulation of these microvilli are influenced by proteins such as ASAP3, which modulates Arf6 activity and actin assembly, thereby controlling microvilli formation and parietal cell function."

  • database_cross_reference "PMID:29263912"

  • database_cross_reference "PMID:31613538"

• parietal cell has exact synonym "oxyntic cell"

  • database_cross_reference "Wikipedia:Parietal_cell"

• parietal cell definition "An epithelial cell of the stomach that is part of the fundic gastric gland. This cell is characterized by its pyramidal shape, abundant mitochondria, and a complex network of secretory canaliculi lined with microvilli. It secretes hydrochloric acid into the stomach lumen and produces intrinsic factor, essential for vitamin B12 absorption."

  • database_cross_reference "GOC:tfm"

  • database_cross_reference "PMID:31670611"

  • database_cross_reference "ISBN:0517223651"

  • database_cross_reference "PMID:31613538"

• parietal cell SubClassOf exocrine cell

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

parietal cell http://purl.obolibrary.org/obo/CL_0000162

Removed

• parietal cell has_exact_synonym "oxyntic cell"

• parietal cell definition "A large, oval stomach epithelial cell with a central nucleus; source of gastric acid. Secretes HCl."

  • database_cross_reference "GOC:tfm"

  • database_cross_reference "ISBN:0517223651"

• parietal cell SubClassOf glandular secretory epithelial cell

• parietal cell SubClassOf capable of some acid secretion

Added

• parietal cell has_exact_synonym "gastric parietal cell"

  • database_cross_reference "PMID:29263912"

• parietal cell comment "Parietal cells have dynamic, actin-supported microvilli that increase in number during active secretion, playing a crucial role in secreting hydrochloric acid and intrinsic factor. The structure and regulation of these microvilli are influenced by proteins such as ASAP3, which modulates Arf6 activity and actin assembly, thereby controlling microvilli formation and parietal cell function."

  • database_cross_reference "PMID:29263912"

  • database_cross_reference "PMID:31613538"

• parietal cell has_exact_synonym "oxyntic cell"

  • database_cross_reference "Wikipedia:Parietal_cell"

• parietal cell definition "An epithelial cell of the stomach that is part of the fundic gastric gland. This cell is characterized by its pyramidal shape, abundant mitochondria, and a complex network of secretory canaliculi lined with microvilli. It secretes hydrochloric acid into the stomach lumen and produces intrinsic factor, essential for vitamin B12 absorption."

  • database_cross_reference "GOC:tfm"

  • database_cross_reference "PMID:31670611"

  • database_cross_reference "ISBN:0517223651"

  • database_cross_reference "PMID:31613538"

• parietal cell SubClassOf capable of some gastric acid secretion

• parietal cell SubClassOf part of some fundic gastric gland

• parietal cell SubClassOf has part some microvillus