move terms under central nervous system neuron

[AvolaAmg]

Fixes #2655

[AvolaAmg]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -simple file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-10-17/cl-simple.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-master.owl/cl-simple.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-10-17/cl-simple.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-pr.owl/cl-simple.owl

Ontology imports

Ontology annotations

Ammon's horn basket cell http://purl.obolibrary.org/obo/CL_2000088

Added

• Ammon's horn basket cell SubClassOf multipolar neuron

L2/3/5 fan Martinotti sst GABAergic interneuron (Mmus) http://purl.obolibrary.org/obo/CL_4023030

Added

• L2/3/5 fan Martinotti sst GABAergic interneuron (Mmus) SubClassOf multipolar neuron

L4 sst Martinotti interneuron (Mmus) http://purl.obolibrary.org/obo/CL_4023031

Added

• L4 sst Martinotti interneuron (Mmus) SubClassOf multipolar neuron

L5 sst T-Martinotti interneuron (Mmus) http://purl.obolibrary.org/obo/CL_4023027

Added

• L5 sst T-Martinotti interneuron (Mmus) SubClassOf multipolar neuron

L5,6 neurogliaform lamp5 GABAergic interneuron (Mmus) http://purl.obolibrary.org/obo/CL_4023023

Added

• L5,6 neurogliaform lamp5 GABAergic interneuron (Mmus) SubClassOf multipolar neuron

Martinotti neuron http://purl.obolibrary.org/obo/CL_4023076

Removed

• Martinotti neuron SubClassOf multipolar neuron

amygdala excitatory neuron http://purl.obolibrary.org/obo/CL_4023039

Removed

• amygdala excitatory neuron definition "Any neuron that has its soma located in some amygdala and is capable of some glutamate secretion, neurotransmission."
  • database_cross_reference "FBC:Autogenerated"

Added

• amygdala excitatory neuron definition "Any neuron that is part of some central nervous system and has its soma located in some amygdala and is capable of some glutamate secretion, neurotransmission."
  • database_cross_reference "FBC:Autogenerated"

amygdala pyramidal neuron http://purl.obolibrary.org/obo/CL_4023110

Removed

• amygdala pyramidal neuron SubClassOf central nervous system neuron

Added

• amygdala pyramidal neuron SubClassOf multipolar neuron

basket cell http://purl.obolibrary.org/obo/CL_0000118

Removed

• basket cell SubClassOf multipolar neuron

cerebellar stellate cell http://purl.obolibrary.org/obo/CL_0010010

Added

• cerebellar stellate cell SubClassOf multipolar neuron

cerebellum basket cell http://purl.obolibrary.org/obo/CL_2000027

Added

• cerebellum basket cell SubClassOf multipolar neuron

cerebral cortex pyramidal neuron http://purl.obolibrary.org/obo/CL_4023111

Added

• cerebral cortex pyramidal neuron SubClassOf multipolar neuron

columnar neuron http://purl.obolibrary.org/obo/CL_0000112

Removed

• columnar neuron SubClassOf neuron

Added

• columnar neuron SubClassOf central nervous system neuron

commissural neuron http://purl.obolibrary.org/obo/CL_0000678

Removed

• commissural neuron SubClassOf neuron

Added

• commissural neuron SubClassOf central nervous system neuron

dentate gyrus of hippocampal formation basket cell http://purl.obolibrary.org/obo/CL_2000087

Added

• dentate gyrus of hippocampal formation basket cell SubClassOf multipolar neuron

dentate gyrus of hippocampal formation stellate cell http://purl.obolibrary.org/obo/CL_2000090

Added

• dentate gyrus of hippocampal formation stellate cell SubClassOf multipolar neuron

hippocampal CA4 neuron http://purl.obolibrary.org/obo/CL_4023061

Removed

• hippocampal CA4 neuron SubClassOf neuron

Added

• hippocampal CA4 neuron SubClassOf central nervous system neuron

hypothalamus kisspeptin neuron http://purl.obolibrary.org/obo/CL_4023123

Removed

• hypothalamus kisspeptin neuron SubClassOf central nervous system neuron

kisspeptin neuron http://purl.obolibrary.org/obo/CL_4023130

Removed

• kisspeptin neuron SubClassOf neuron

Added

• kisspeptin neuron SubClassOf central nervous system neuron

lateral ganglionic eminence derived neuron http://purl.obolibrary.org/obo/CL_4023035

Removed

• lateral ganglionic eminence derived neuron SubClassOf neuron

Added

• lateral ganglionic eminence derived neuron SubClassOf central nervous system neuron

midbrain-derived inhibitory neuron http://purl.obolibrary.org/obo/CL_4023079

Removed

• midbrain-derived inhibitory neuron SubClassOf neuron

Added

• midbrain-derived inhibitory neuron SubClassOf central nervous system neuron

multipolar neuron http://purl.obolibrary.org/obo/CL_0000104

Removed

• multipolar neuron SubClassOf neuron

Added

• multipolar neuron SubClassOf central nervous system neuron

neocortex basket cell http://purl.obolibrary.org/obo/CL_2000086

Added

• neocortex basket cell SubClassOf multipolar neuron

neurogliaform cell http://purl.obolibrary.org/obo/CL_0000693

Removed

• neurogliaform cell SubClassOf multipolar neuron

neurogliaform lamp5 GABAergic cortical interneuron (Mmus) http://purl.obolibrary.org/obo/CL_4023024

Added

• neurogliaform lamp5 GABAergic cortical interneuron (Mmus) SubClassOf multipolar neuron

olfactory bulb tufted cell http://purl.obolibrary.org/obo/CL_1001503

Removed

• olfactory bulb tufted cell SubClassOf neuron

Added

• olfactory bulb tufted cell SubClassOf central nervous system neuron

pyramidal neuron http://purl.obolibrary.org/obo/CL_0000598

Removed

• pyramidal neuron SubClassOf multipolar neuron

Added

• pyramidal neuron SubClassOf neuron

stellate interneuron http://purl.obolibrary.org/obo/CL_0000691

Removed

• stellate interneuron SubClassOf multipolar neuron

stellate neuron http://purl.obolibrary.org/obo/CL_0000122

Removed

• stellate neuron SubClassOf multipolar neuron

trigeminal neuron http://purl.obolibrary.org/obo/CL_4023169

Removed

• trigeminal neuron SubClassOf neuron

Added

• trigeminal neuron SubClassOf central nervous system neuron

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

amygdala excitatory neuron http://purl.obolibrary.org/obo/CL_4023039

Removed

• amygdala excitatory neuron EquivalentTo neuron and (has soma location some amygdala) and (capable of some glutamate secretion, neurotransmission)

Added

• amygdala excitatory neuron EquivalentTo neuron and (part of some central nervous system) and (has soma location some amygdala) and (capable of some glutamate secretion, neurotransmission)

columnar neuron http://purl.obolibrary.org/obo/CL_0000112

Removed

• columnar neuron SubClassOf neuron

Added

• columnar neuron SubClassOf central nervous system neuron

commissural neuron http://purl.obolibrary.org/obo/CL_0000678

Removed

• commissural neuron SubClassOf neuron

Added

• commissural neuron SubClassOf central nervous system neuron

hippocampal CA4 neuron http://purl.obolibrary.org/obo/CL_4023061

Removed

• hippocampal CA4 neuron SubClassOf neuron

Added

• hippocampal CA4 neuron SubClassOf neuron and (has soma location some central nervous system)

kisspeptin neuron http://purl.obolibrary.org/obo/CL_4023130

Removed

• kisspeptin neuron EquivalentTo neuron and (expresses some metastasis-suppressor KiSS-1)

Added

• kisspeptin neuron EquivalentTo neuron and (has soma location some central nervous system) and (expresses some metastasis-suppressor KiSS-1)

lateral ganglionic eminence derived neuron http://purl.obolibrary.org/obo/CL_4023035

Removed

• lateral ganglionic eminence derived neuron EquivalentTo neuron and (develops from some lateral ganglionic eminence)

Added

• lateral ganglionic eminence derived neuron EquivalentTo neuron and (has soma location some central nervous system) and (develops from some lateral ganglionic eminence)

midbrain-derived inhibitory neuron http://purl.obolibrary.org/obo/CL_4023079

Removed

• midbrain-derived inhibitory neuron EquivalentTo neuron and (develops from some midbrain)

Added

• midbrain-derived inhibitory neuron EquivalentTo neuron and (has soma location some central nervous system) and (develops from some midbrain)

multipolar neuron http://purl.obolibrary.org/obo/CL_0000104

Removed

• multipolar neuron EquivalentTo neuron and (bearer of some multipolar neuron morphology)

Added

• multipolar neuron EquivalentTo neuron and (bearer of some multipolar neuron morphology) and (has soma location some central nervous system)

olfactory bulb tufted cell http://purl.obolibrary.org/obo/CL_1001503

Removed

• olfactory bulb tufted cell SubClassOf neuron

Added

• olfactory bulb tufted cell SubClassOf central nervous system neuron

trigeminal neuron http://purl.obolibrary.org/obo/CL_4023169

Removed

• trigeminal neuron SubClassOf neuron

Added

• trigeminal neuron SubClassOf central nervous system neuron

[AvolaAmg]

#gogoeditdiff