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Popular repositories Loading

  1. blender-tissue-cartography blender-tissue-cartography Public

    Extract surfaces from volumetric microscopy images and project volumetric data to planar textures using blender

    Jupyter Notebook 3

  2. mechanical_feedback mechanical_feedback Public

    Code for the investiagtion of mechanical feedback in the Drosophila embryo

    Jupyter Notebook 1

  3. Geometric-control-of-Myosin-II-orientation-during-axis-elongation Geometric-control-of-Myosin-II-orientation-during-axis-elongation Public

    Image processing code for the paper "Geometric control of Myosin-II orientation during axis elongation" by Lefebvre et al.

    Python

  4. CE_simulation_public CE_simulation_public Public

    tension-dynamics model of epithelial convergent extension [arXiv:2311.16384]

    Jupyter Notebook

  5. geometric_basis_of_convergent_extension_simulation geometric_basis_of_convergent_extension_simulation Public

    Code for the simulations shown in the paper "The geometric basis of epithelial convergent extension" by F. Brauns, N.H. Claussen, E.F. Wieschaus, and B.I. Shraiman.

    Jupyter Notebook

  6. windowed_radon windowed_radon Public

    Detect line-like elements in image with a windowed radon filter

    Jupyter Notebook