Correct spacing of images read from zarr files. #148
Workflow file for this run
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| name: Python Test and Package | |
| on: | |
| push: | |
| branches: | |
| - master | |
| tags: | |
| - 'v*' | |
| pull_request: | |
| branches: | |
| - master | |
| jobs: | |
| linting_test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| - name: Linting | |
| run: | | |
| python -m pip install pre-commit trufflehog3>=3.0 | |
| pre-commit run --all-files | |
| - name: set PY | |
| run: echo "PY=$(python -VV | sha256sum | cut -d' ' -f1)" >> $GITHUB_ENV | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pre-commit | |
| key: pre-commit|${{ env.PY }}|${{ hashFiles('.pre-commit-config.yaml') }} | |
| - name: Run trufflehog3 detector | |
| run: | | |
| trufflehog3 -v -c trufflehog3.yml . && echo "tufflehog3 OK" | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.8, 3.9, '3.10', '3.11'] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -e .[zarr,dev] | |
| - name: Test with pytest | |
| run: | | |
| python -m pytest | |
| package_docs: | |
| needs: test | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.11 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install -e .[zarr] twine build | |
| - name: Build package | |
| run: | | |
| python -m build --wheel --sdist | |
| python -m twine check dist/* | |
| ls -la dist | |
| - name: Upload package | |
| if: github.event_name == 'push' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: python-packages | |
| path: dist | |
| - name: Build Sphinx Documentation | |
| run: | | |
| pip install -r docs/requirements.txt | |
| make -C docs html | |
| - name: Upload documentation | |
| if: github.event_name == 'push' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: sphinx-docs | |
| path: docs/_build/html | |
| - name: Update gh-pages | |
| if: github.ref == 'refs/heads/master' | |
| run: | | |
| rm docs/_build/html/.buildinfo | |
| touch docs/_build/html/.nojekyll | |
| git update-ref refs/heads/${TARGET_BRANCH} origin/${TARGET_BRANCH} | |
| ./utils/update-gh-pages.sh docs/_build/html | |
| repo_uri="https://x-access-token:${GITHUB_TOKEN}@github.com/${GITHUB_REPOSITORY}.git" | |
| git push $repo_uri ${TARGET_BRANCH} | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.github_token }} | |
| TARGET_BRANCH: 'gh-pages' |