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Benchmarking methods for mapping functional connectivity in the brain

This repository contains code and data in support of "Benchmarking methods for mapping functional connectivity in the brain", now up on bioRxiv.

Due to the size limit, the raw data files are not included in this repository. You can download them from the OSF repository here.

code

The code folder contains relevant scripts used to run the analyses and generate the figures.

A description of each file follows (in an order that complements the manuscript):

Scripts in italic are not necessary for running the analysis scripts as some key variables are provided in data/derivatives folder.

data

The data folder contains data files used for the analyses. Please download files you need from the OSF repository here for replication.

  • data/derivatives contains some key variables used in the analyses. You probably only need these to run the analysis scripts in the code folder.
  • data/raw contains raw pyspi outputs and some additional data files.

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