MokaGuys
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automate_demultiplex
automate_demultiplex PublicScripts for routine analysis of clinical next generation sequencing (NGS) data at Synnovis Genetics
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dnanexus_swiss_army_SNP_bcftools_filter
dnanexus_swiss_army_SNP_bcftools_filter PublicThis repository contains the commands executed by the swiss army knife app (v3.0.0) to format a VCF according to GeL specifications for SNP ID checks
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dnanexus_ED_cnv_calling
dnanexus_ED_cnv_calling PublicPerforms CNV calling using ExomeDepth.
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Repositories
- bedmakerGUI Public
moka-guys/bedmakerGUI’s past year of commit activity - dnanexus_scip_mpileup Public
Modified version of dnanexus_mpileup to do some extra data manipulation on scip patient data
moka-guys/dnanexus_scip_mpileup’s past year of commit activity - get_DNAnexus_URLs Public
Generates a .json containing URLs for VCF, BAM and index files located on DNAnexus for use in the IGV browser
moka-guys/get_DNAnexus_URLs’s past year of commit activity - dnanexus_archer_api_upload Public
moka-guys/dnanexus_archer_api_upload’s past year of commit activity - archer_api_upload Public
moka-guys/archer_api_upload’s past year of commit activity - dnanexus_ED_readcount_analysis Public
This app calculates the readcount for a batch of samples for CNV calling using ExomeDepth.
moka-guys/dnanexus_ED_readcount_analysis’s past year of commit activity