Merge pull request #1183 from ksugar/fix-path-resolution

fix: correct path resolution with root directory handling
mobie · Oct 23, 2024 · 81e8fab · 81e8fab
2 parents 69cedce + 82798cd
commit 81e8fab
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/main/java/org/embl/mobie/lib/data/ImageGridSources.java b/src/main/java/org/embl/mobie/lib/data/ImageGridSources.java
@@ -133,7 +133,7 @@ else if ( isCellProfilerColumn( imageColumn, table ) )
 			for ( int rowIndex = 0; rowIndex < numRows; rowIndex++ )
 			{
 				String fileName = table.getString( rowIndex, imageColumn );
-				String folder = table.getString( rowIndex, folderColumn );
+				String folder = root != null ? root : table.getString( rowIndex, folderColumn );
 				String path = IOHelper.combinePath( folder, fileName );
 				String imageName = createImageName( channelIndex, fileName );
 				nameToFullPath.put( imageName, applyPathMapping( pathMapping, path ) );