Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

consistency across converters #2

Open
wants to merge 3 commits into
base: master
Choose a base branch
from

Conversation

thomaskelder
Copy link
Contributor

Tried to make the different conversion scripts more consistent. Biggest change is that they all use the MiRNANode class now to add the miRNA to the network. This may result in different output than the original code: 1) all nodes now have the mature mirbas ID as identifier (before it was sometimes the hsa-mir-* form, other times the mirbase ID), 2) nodes that could not be mapped to mirbase are skipped with a warning in the log. Please see if this is OK for CyTargetLinker - i.e. if it doesn't break anything :).

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant