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DNA-RNA hybrids #72
DNA-RNA hybrids #72
Commits on Mar 9, 2023
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Commits on Mar 10, 2023
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Commits on Mar 17, 2023
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Revert "Add a pivot move to the MC2 backend"
This reverts commit b867624.
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Revert "Remove some unnecessary checks on the required keys from the …
…MC backend" This reverts commit 7ec2968.
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Revert "Revert "Add a pivot move to the MC2 backend""
This reverts commit b09640c.
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Commits on Mar 23, 2023
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Commits on Mar 24, 2023
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Commits on Mar 29, 2023
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DNAwithRNA_relax interaction type
Added an interaction type for relaxing systems containing both DNA and RNA.
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Commits on Apr 5, 2023
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Commits on Apr 13, 2023
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Commits on Apr 22, 2023
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Commits on Apr 26, 2023
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Commits on May 6, 2023
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Commits on May 10, 2023
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Hybrid interaction with inheritance
Rewriting the DNA/RNA hybrid interaction to inherit from the DNA2 and RNA2 interactions.
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Commits on May 23, 2023
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Fixed bugs caused by double inheritance (i think), updated function for checking input sanity to accommodate for both DNA and RNA in the system.
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Commits on May 25, 2023
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Interaction type with modified backbone potential for relaxing systems containing both DNA and RNA.
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Merge branch 'double-inheritance' of https://github.com/eryykr/oxDNA-…
…dna-rna-hybrids into double-inheritance
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Commits on May 29, 2023
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Commits on Jun 4, 2023
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Commits on Jun 16, 2023
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Commits on Jul 14, 2023
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Commits on Jul 15, 2023
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Commits on Sep 19, 2023
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Merge pull request #1 from eryykr/double-inheritance
Version of hybrid model which uses inheritance
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Commits on Sep 20, 2023
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Commits on Sep 25, 2023
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Commits on Sep 26, 2023
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Merge pull request #68 from eryykr/master
Add the DNA-RNA hybrid model
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Commits on Oct 8, 2023
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This commit adds 6 more tests to the `run` level. These tests check that the DNA, RNA and DRH interactions compute the right energies for a short nicked duplex
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Remove a private member from the DNA and RNA classes
The member was used to check in the RNA and DNA classes whether the instance of the interaction was actually a DRH interaction. We now check this with a local variable since we need this information only at the very beginning
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Commits on Oct 9, 2023
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* Remove some unusued define's * Turn a char[] into a std::string * Move the information about the type of each nucleotide (R or D) from BaseParticle to the DRHInteraction
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