I analyze genomic/metagenomic data to probe the ecology and evolution of phototrophy and the iron cycle. Currently a Young Research Fellow at JAMSTEC, Japan.
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rotary-genomics/rotary
rotary-genomics/rotary PublicAssembly/annotation workflow for Nanopore-based microbial genome data containing circular DNA elements
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Ca-Chlorohelix-allophototropha-RCI
Ca-Chlorohelix-allophototropha-RCI PublicCode repository associated with the manuscript, "'Candidatus Chlorohelix allophototropha,' the first anoxygenic phototrophic Chloroflexota member to use a Type I photosynthetic reaction center"
Jupyter Notebook
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basic-sequence-analysis
basic-sequence-analysis PublicPersonal scripts for performing basic sequence file manipulations (FastA, FastQ)
HTML
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chlorobia-cyc2-genomics
chlorobia-cyc2-genomics PublicCompanion repository to the manuscript, "Anoxygenic photosynthesis and iron–sulfur metabolic potential of Chlorobia populations from seasonally anoxic Boreal Shield lakes"
Jupyter Notebook 1
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atlas2-helpers
atlas2-helpers PublicHelper scripts for post-processing of ATLAS output, version 2 and higher
Python
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