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Tutorials for accelerating genomics workloads on HiperGator using tools including Parabricks and RAPIDS.

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genomics_uf_tutorials

Download this repository on HiperGator

Log in to HiperGator, change hju to your HiperGator username

ssh hju@hpg.rc.ufl.edu

Go to your home directory (you can go to other directories)

cd ~

Download this repository into a local directory. The default name of the directory is genomics_uf_tutorials.

git clone https://github.com/hw-ju/genomics_uf_tutorials.git

Make all files in the directory executable

chmod -R +x genomics_uf_tutorials/

Contents

  1. use Parabricks for Whole-Genome Somatic Small Variant Calling

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Tutorials for accelerating genomics workloads on HiperGator using tools including Parabricks and RAPIDS.

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