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Auto Update Modules [19 October 2024, 15:43]
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Expand Up @@ -22,7 +22,7 @@ module load CUDA/12.5.0
| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|CUDA/12.5.0|x|-|x|-|x|-|-|
|CUDA/12.1.1|x|-|x|-|x|-|-|
|CUDA/12.1.1|x|x|x|x|x|x|x|
|CUDA/11.7.0|x|x|x|x|x|-|-|
|CUDA/11.4.1|x|-|-|-|x|-|-|
|CUDA/11.3.1|x|x|x|-|x|-|-|
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24 changes: 24 additions & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/Cellformer.md
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---
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- toc
---

Cellformer
==========

# Available modules


The overview below shows which Cellformer installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).

To start using Cellformer, load one of these modules using a `module load` command like:

```shell
module load Cellformer/20240917-foss-2023a-R-4.3.2
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Cellformer/20240917-foss-2023a-R-4.3.2|x|x|x|x|x|x|x|
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---
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---

EVidenceModeler
===============

# Available modules


The overview below shows which EVidenceModeler installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).

To start using EVidenceModeler, load one of these modules using a `module load` command like:

```shell
module load EVidenceModeler/2.1.0-foss-2023a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|EVidenceModeler/2.1.0-foss-2023a|x|x|x|x|x|x|x|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/FASTA.md
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Expand Up @@ -14,12 +14,13 @@ The overview below shows which FASTA installations are available per HPC-UGent T
To start using FASTA, load one of these modules using a `module load` command like:

```shell
module load FASTA/36.3.8i-GCC-12.2.0
module load FASTA/36.3.8i-GCC-12.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|FASTA/36.3.8i-GCC-12.3.0|x|x|x|x|x|x|x|
|FASTA/36.3.8i-GCC-12.2.0|x|x|x|x|x|-|-|
|FASTA/36.3.8i-GCC-11.2.0|x|x|x|x|x|-|-|
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Expand Up @@ -22,7 +22,7 @@ module load GDRCopy/2.4-GCCcore-13.2.0
| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|GDRCopy/2.4-GCCcore-13.2.0|x|-|x|-|x|-|-|
|GDRCopy/2.3.1-GCCcore-12.3.0|x|-|x|-|x|-|-|
|GDRCopy/2.3.1-GCCcore-12.3.0|x|-|x|-|x|x|x|
|GDRCopy/2.3-GCCcore-11.3.0|x|x|x|-|x|-|-|
|GDRCopy/2.3-GCCcore-11.2.0|x|x|x|-|x|-|-|
|GDRCopy/2.2-GCCcore-10.3.0|x|-|-|-|x|-|-|
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which GMAP-GSNAP installations are available per HPC-UG
To start using GMAP-GSNAP, load one of these modules using a `module load` command like:

```shell
module load GMAP-GSNAP/2023-04-20-GCC-12.2.0
module load GMAP-GSNAP/2023-04-20-GCC-12.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|GMAP-GSNAP/2023-04-20-GCC-12.3.0|x|x|x|x|x|x|x|
|GMAP-GSNAP/2023-04-20-GCC-12.2.0|x|x|x|x|x|-|-|
|GMAP-GSNAP/2023-02-17-GCC-11.3.0|x|x|x|x|x|-|-|
|GMAP-GSNAP/2021-12-17-GCC-11.2.0|x|x|x|x|x|-|-|
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which Longshot installations are available per HPC-UGen
To start using Longshot, load one of these modules using a `module load` command like:

```shell
module load Longshot/0.4.5-GCCcore-11.3.0
module load Longshot/1.0.0-GCCcore-12.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Longshot/1.0.0-GCCcore-12.3.0|x|x|x|x|x|x|x|
|Longshot/0.4.5-GCCcore-11.3.0|x|x|x|x|x|-|-|
|Longshot/0.4.3-GCCcore-10.2.0|-|-|x|-|x|-|-|
|Longshot/0.4.1-GCCcore-8.3.0|-|x|-|-|-|-|-|
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Expand Up @@ -21,7 +21,7 @@ module load NCCL/2.18.3-GCCcore-12.3.0-CUDA-12.1.1

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|NCCL/2.18.3-GCCcore-12.3.0-CUDA-12.1.1|x|-|x|-|x|-|-|
|NCCL/2.18.3-GCCcore-12.3.0-CUDA-12.1.1|x|-|x|-|x|x|x|
|NCCL/2.12.12-GCCcore-11.3.0-CUDA-11.7.0|x|-|x|-|x|-|-|
|NCCL/2.10.3-GCCcore-11.2.0-CUDA-11.4.1|x|-|-|-|x|-|-|
|NCCL/2.10.3-GCCcore-10.3.0-CUDA-11.3.1|x|-|-|-|x|-|-|
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24 changes: 24 additions & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/NextPolish.md
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---
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---

NextPolish
==========

# Available modules


The overview below shows which NextPolish installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).

To start using NextPolish, load one of these modules using a `module load` command like:

```shell
module load NextPolish/1.4.1-GCC-12.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|NextPolish/1.4.1-GCC-12.3.0|x|x|x|x|x|x|x|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/PASA.md
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Expand Up @@ -14,11 +14,12 @@ The overview below shows which PASA installations are available per HPC-UGent Ti
To start using PASA, load one of these modules using a `module load` command like:

```shell
module load PASA/2.5.3-foss-2022b
module load PASA/2.5.3-foss-2023a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|PASA/2.5.3-foss-2023a|x|x|x|x|x|x|x|
|PASA/2.5.3-foss-2022b|x|x|x|x|x|-|-|
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Expand Up @@ -14,11 +14,12 @@ The overview below shows which Trimmomatic installations are available per HPC-U
To start using Trimmomatic, load one of these modules using a `module load` command like:

```shell
module load Trimmomatic/0.39-Java-11
module load Trimmomatic/0.39-Java-17
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Trimmomatic/0.39-Java-11|x|x|x|x|x|-|-|
|Trimmomatic/0.39-Java-17|x|x|x|x|x|x|x|
|Trimmomatic/0.39-Java-11|x|x|x|x|x|x|x|
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Expand Up @@ -22,7 +22,7 @@ module load UCX-CUDA/1.15.0-GCCcore-13.2.0-CUDA-12.5.0
| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|UCX-CUDA/1.15.0-GCCcore-13.2.0-CUDA-12.5.0|x|-|x|-|x|-|-|
|UCX-CUDA/1.14.1-GCCcore-12.3.0-CUDA-12.1.1|x|-|x|-|x|-|-|
|UCX-CUDA/1.14.1-GCCcore-12.3.0-CUDA-12.1.1|x|-|x|-|x|x|x|
|UCX-CUDA/1.12.1-GCCcore-11.3.0-CUDA-11.7.0|x|-|x|-|x|-|-|
|UCX-CUDA/1.11.2-GCCcore-11.2.0-CUDA-11.4.1|x|-|-|-|x|-|-|
|UCX-CUDA/1.10.0-GCCcore-10.3.0-CUDA-11.3.1|x|-|-|-|x|-|-|
5 changes: 4 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/Z3.md
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Expand Up @@ -14,16 +14,19 @@ The overview below shows which Z3 installations are available per HPC-UGent Tier
To start using Z3, load one of these modules using a `module load` command like:

```shell
module load Z3/4.12.2-GCCcore-12.3.0-Python-3.11.3
module load Z3/4.13.0-GCCcore-13.2.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Z3/4.13.0-GCCcore-13.2.0|x|x|x|x|x|x|x|
|Z3/4.12.2-GCCcore-12.3.0-Python-3.11.3|x|x|x|x|x|-|-|
|Z3/4.12.2-GCCcore-12.3.0|x|x|x|x|x|x|x|
|Z3/4.12.2-GCCcore-12.2.0-Python-3.10.8|x|x|x|x|x|-|-|
|Z3/4.12.2-GCCcore-12.2.0|x|x|x|x|x|x|-|
|Z3/4.10.2-GCCcore-11.3.0-Python-3.10.4|x|-|x|-|x|-|-|
|Z3/4.10.2-GCCcore-11.3.0|x|x|x|x|x|x|-|
|Z3/4.8.12-GCCcore-11.2.0|x|x|x|x|x|-|-|
|Z3/4.8.11-GCCcore-10.3.0|x|x|x|x|x|-|-|
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Expand Up @@ -21,7 +21,7 @@ module load cuDNN/8.9.2.26-CUDA-12.1.1

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|cuDNN/8.9.2.26-CUDA-12.1.1|x|-|x|-|x|-|-|
|cuDNN/8.9.2.26-CUDA-12.1.1|x|x|x|-|x|x|x|
|cuDNN/8.4.1.50-CUDA-11.7.0|x|-|x|-|x|-|-|
|cuDNN/8.2.2.26-CUDA-11.4.1|x|-|-|-|x|-|-|
|cuDNN/8.2.1.32-CUDA-11.3.1|x|x|x|-|x|-|-|
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which expecttest installations are available per HPC-UG
To start using expecttest, load one of these modules using a `module load` command like:

```shell
module load expecttest/0.1.5-GCCcore-12.3.0
module load expecttest/0.2.1-GCCcore-13.2.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|expecttest/0.2.1-GCCcore-13.2.0|x|x|x|x|x|x|x|
|expecttest/0.1.5-GCCcore-12.3.0|x|x|x|x|x|x|x|
|expecttest/0.1.3-GCCcore-12.2.0|x|x|x|x|x|-|-|
|expecttest/0.1.3-GCCcore-11.3.0|x|x|x|x|x|x|-|
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Expand Up @@ -22,3 +22,4 @@ module load hatch-jupyter-builder/0.9.1-GCCcore-13.2.0
| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|hatch-jupyter-builder/0.9.1-GCCcore-13.2.0|x|x|x|x|x|x|x|
|hatch-jupyter-builder/0.9.1-GCCcore-12.3.0|x|x|x|x|-|x|x|
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Expand Up @@ -21,7 +21,7 @@ module load magma/2.7.2-foss-2023a-CUDA-12.1.1

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|magma/2.7.2-foss-2023a-CUDA-12.1.1|x|-|x|-|x|-|-|
|magma/2.7.2-foss-2023a-CUDA-12.1.1|x|-|x|-|x|x|x|
|magma/2.6.2-foss-2022a-CUDA-11.7.0|x|-|x|-|x|-|-|
|magma/2.6.1-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|
|magma/2.5.4-fosscuda-2020b|x|-|-|-|x|-|-|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/pblat.md
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Expand Up @@ -14,11 +14,12 @@ The overview below shows which pblat installations are available per HPC-UGent T
To start using pblat, load one of these modules using a `module load` command like:

```shell
module load pblat/2.5.1-foss-2022b
module load pblat/2.5.1-foss-2023a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|pblat/2.5.1-foss-2023a|x|x|x|x|x|x|x|
|pblat/2.5.1-foss-2022b|x|x|x|x|x|-|-|
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Expand Up @@ -14,11 +14,12 @@ The overview below shows which pretty-yaml installations are available per HPC-U
To start using pretty-yaml, load one of these modules using a `module load` command like:

```shell
module load pretty-yaml/21.10.1-GCCcore-10.3.0
module load pretty-yaml/24.7.0-GCCcore-12.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|pretty-yaml/24.7.0-GCCcore-12.3.0|x|x|x|x|x|x|x|
|pretty-yaml/21.10.1-GCCcore-10.3.0|x|x|x|-|x|-|-|
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Expand Up @@ -14,15 +14,16 @@ The overview below shows which protobuf-python installations are available per H
To start using protobuf-python, load one of these modules using a `module load` command like:

```shell
module load protobuf-python/4.24.0-GCCcore-12.3.0
module load protobuf-python/4.25.3-GCCcore-13.2.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|protobuf-python/4.25.3-GCCcore-13.2.0|x|x|x|x|x|x|x|
|protobuf-python/4.24.0-GCCcore-12.3.0|x|x|x|x|x|x|x|
|protobuf-python/4.23.0-GCCcore-12.2.0|x|x|x|x|x|-|-|
|protobuf-python/4.23.0-GCCcore-12.2.0|x|x|x|x|x|x|-|
|protobuf-python/3.19.4-GCCcore-11.3.0|x|x|x|x|x|x|-|
|protobuf-python/3.17.3-GCCcore-11.2.0|x|x|x|x|x|-|-|
|protobuf-python/3.17.3-GCCcore-10.3.0|x|x|x|x|x|-|-|
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Expand Up @@ -14,15 +14,16 @@ The overview below shows which protobuf installations are available per HPC-UGen
To start using protobuf, load one of these modules using a `module load` command like:

```shell
module load protobuf/24.0-GCCcore-12.3.0
module load protobuf/25.3-GCCcore-13.2.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|protobuf/25.3-GCCcore-13.2.0|x|x|x|x|x|x|x|
|protobuf/24.0-GCCcore-12.3.0|x|x|x|x|x|x|x|
|protobuf/23.0-GCCcore-12.2.0|x|x|x|x|x|-|-|
|protobuf/23.0-GCCcore-12.2.0|x|x|x|x|x|x|-|
|protobuf/3.19.4-GCCcore-11.3.0|x|x|x|x|x|x|-|
|protobuf/3.17.3-GCCcore-11.2.0|x|x|x|x|x|-|-|
|protobuf/3.17.3-GCCcore-10.3.0|x|x|x|x|x|-|-|
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Expand Up @@ -14,11 +14,14 @@ The overview below shows which pytest-flakefinder installations are available pe
To start using pytest-flakefinder, load one of these modules using a `module load` command like:

```shell
module load pytest-flakefinder/1.1.0-GCCcore-12.3.0
module load pytest-flakefinder/1.1.0-GCCcore-13.2.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|pytest-flakefinder/1.1.0-GCCcore-13.2.0|x|x|x|x|x|x|x|
|pytest-flakefinder/1.1.0-GCCcore-12.3.0|x|x|x|x|x|x|x|
|pytest-flakefinder/1.1.0-GCCcore-12.2.0|x|x|x|x|x|x|-|
|pytest-flakefinder/1.1.0-GCCcore-11.3.0|x|x|x|x|x|x|-|
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which pytest-rerunfailures installations are available
To start using pytest-rerunfailures, load one of these modules using a `module load` command like:

```shell
module load pytest-rerunfailures/12.0-GCCcore-12.3.0
module load pytest-rerunfailures/14.0-GCCcore-13.2.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|pytest-rerunfailures/14.0-GCCcore-13.2.0|x|x|x|x|x|x|x|
|pytest-rerunfailures/12.0-GCCcore-12.3.0|x|x|x|x|x|x|x|
|pytest-rerunfailures/12.0-GCCcore-12.2.0|x|x|x|x|x|-|-|
|pytest-rerunfailures/11.1-GCCcore-11.3.0|x|-|x|-|x|-|-|
|pytest-rerunfailures/12.0-GCCcore-12.2.0|x|x|x|x|x|x|-|
|pytest-rerunfailures/11.1-GCCcore-11.3.0|x|x|x|x|x|x|-|
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which pytest-shard installations are available per HPC-
To start using pytest-shard, load one of these modules using a `module load` command like:

```shell
module load pytest-shard/0.1.2-GCCcore-12.3.0
module load pytest-shard/0.1.2-GCCcore-13.2.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|pytest-shard/0.1.2-GCCcore-13.2.0|x|x|x|x|x|x|x|
|pytest-shard/0.1.2-GCCcore-12.3.0|x|x|x|x|x|x|x|
|pytest-shard/0.1.2-GCCcore-12.2.0|x|x|x|x|x|-|-|
|pytest-shard/0.1.2-GCCcore-11.3.0|x|-|x|-|x|-|-|
|pytest-shard/0.1.2-GCCcore-12.2.0|x|x|x|x|x|x|-|
|pytest-shard/0.1.2-GCCcore-11.3.0|x|-|x|-|x|x|-|
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Expand Up @@ -25,7 +25,7 @@ module load typing-extensions/4.10.0-GCCcore-13.2.0
|typing-extensions/4.9.0-GCCcore-12.3.0|x|x|x|x|x|x|x|
|typing-extensions/4.9.0-GCCcore-12.2.0|x|x|x|x|x|-|-|
|typing-extensions/4.8.0-GCCcore-12.3.0|-|x|-|x|-|-|-|
|typing-extensions/4.3.0-GCCcore-11.3.0|x|x|x|x|x|-|-|
|typing-extensions/4.3.0-GCCcore-11.3.0|x|x|x|x|x|x|-|
|typing-extensions/3.10.0.2-GCCcore-11.2.0|x|x|x|x|x|-|-|
|typing-extensions/3.10.0.0-GCCcore-10.3.0|x|x|x|x|x|-|-|
|typing-extensions/3.7.4.3-GCCcore-10.2.0|x|x|x|x|x|-|-|
2 changes: 1 addition & 1 deletion mkdocs/extra/gent.yml
Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,7 @@ hpcname: hpcugent
loginnode: login.hpc.ugent.be
loginhost: gligar07.gastly.os
altloginhost: gligar08.gastly.os
modules_last_updated: Wed, 16 Oct 2024 at 15:44:27 CEST # This line is automatically updated by scripts/available_modules/available_modules.py
modules_last_updated: Sat, 19 Oct 2024 at 15:44:31 CEST # This line is automatically updated by scripts/available_modules/available_modules.py
# get these with ssh-keyscan gligar01.ugent.be > file
# ssh-keygen -l -f file
# ssh-keygen -l -f file -E md5
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