Update to latest cutadapt interface in quality control #5462
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Also bump cutadapt version in ref-based transcriptomics
hexylena
reviewed
Oct 18, 2024
| @@ -265,7 +265,7 @@ We should trim the reads to get rid of bases that were sequenced with high uncer | |||
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| > <hands-on-title>Trimming FASTQs</hands-on-title> | |||
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| > 1. {% tool [Cutadapt](toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy1) %} with the following parameters to trim low quality sequences: | |||
| > 1. {% tool [Cutadapt](toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy1) %} with the following parameters to trim low quality sequences: | |||
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could the relevant workflows be updated as well if it's not too much bother?
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Done for the ref-based ones.
The QC one is so outdated and trivial at the same time that it would be easier to just recreate it from scratch, but I don't have time now anymore.
hexylena
approved these changes
Oct 21, 2024
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Also bump cutadapt version in ref-based transcriptomics