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ampvis2 tutorial first upload #4968

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ampvis2 tutorial first upload #4968

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Commits on May 14, 2024

  1. Create new tutorial.md 

    testing for git forking works and looks for me
    @lenaarenot
    lenaarenot authored May 14, 2024
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  2. Merge pull request #1 from lenaarenot/lenaarenot-ampvis2_heatmap 

    testing creating a new tutorial.md
    @lenaarenot
    lenaarenot authored May 14, 2024
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Commits on May 22, 2024

  1. Merge branch 'galaxyproject:main' into main

    @lenaarenot
    lenaarenot authored May 22, 2024
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Commits on May 24, 2024

  1. Merge branch 'galaxyproject:main' into main

    @lenaarenot
    lenaarenot authored May 24, 2024
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  2. added the first section of tutorial.md

    @lenaarenot
    lenaarenot authored May 24, 2024
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Commits on Jun 4, 2024

  1. move toturial, remove wrong md

    @paulzierep
    paulzierep committed Jun 4, 2024
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  2. Update topics/microbiome/tutorials/visualisation-ampvis/tutorial.md 

    Co-authored-by: paulzierep <paul.zierep@googlemail.com>
    @lenaarenot @paulzierep
    lenaarenot and paulzierep authored Jun 4, 2024
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  3. Merge branch 'galaxyproject:main' into ampvis2_tutorialfirst_upload

    @lenaarenot
    lenaarenot authored Jun 4, 2024
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  4. Merge branch 'galaxyproject:main' into main

    @lenaarenot
    lenaarenot authored Jun 4, 2024
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  5. Merge branch 'galaxyproject:main' into ampvis2_tutorialfirst_upload

    @lenaarenot
    lenaarenot authored Jun 4, 2024
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Commits on Jun 15, 2024

  1. updated text in tutorial.md, tutorial.bib, added images folder

    @lenaarenot
    lenaarenot committed Jun 15, 2024
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Commits on Jun 19, 2024

  1. add lena as contributor

    @paulzierep
    paulzierep committed Jun 19, 2024
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  2. merge with remote

    @lenaarenot
    lenaarenot committed Jun 19, 2024
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  3. revert

    @lenaarenot
    lenaarenot committed Jun 19, 2024
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  4. change version

    @paulzierep
    paulzierep committed Jun 19, 2024
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  5. fixed images and citations

    @lenaarenot
    lenaarenot committed Jun 19, 2024
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  6. fixed citations

    @lenaarenot
    lenaarenot committed Jun 19, 2024
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Commits on Jun 20, 2024

  1. updated text and added more citations

    @lenaarenot
    lenaarenot committed Jun 20, 2024
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  2. tried note boxes insted of note in a text

    @lenaarenot
    lenaarenot committed Jun 20, 2024
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Commits on Jun 24, 2024

  1. added question boxes and updated text

    @lenaarenot
    lenaarenot committed Jun 24, 2024
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Commits on Jun 26, 2024

  1. updated rarefaction section

    @lenaarenot
    lenaarenot committed Jun 26, 2024
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  2. fixed first wuestion box

    @lenaarenot
    lenaarenot committed Jun 26, 2024
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  3. fixed first question box again

    @lenaarenot
    lenaarenot committed Jun 26, 2024
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  4. added hands-on how to preparedatasets out of 1 excel sheet

    @lenaarenot
    lenaarenot committed Jun 26, 2024
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  5. fixed first question box again

    @lenaarenot
    lenaarenot committed Jun 26, 2024
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  6. fixed first questions box image

    @lenaarenot
    lenaarenot committed Jun 26, 2024
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  7. fixed first questions box image 2.0

    @lenaarenot
    lenaarenot committed Jun 26, 2024
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  8. fixed first questions box image 3.0

    @lenaarenot
    lenaarenot committed Jun 26, 2024
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  9. fixed first questions box image 4.0

    @lenaarenot
    lenaarenot committed Jun 26, 2024
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  10. added last missind question section

    @lenaarenot
    lenaarenot committed Jun 26, 2024
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  11. removed to_do

    @lenaarenot
    lenaarenot committed Jun 26, 2024
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Commits on Jun 27, 2024

  1. checked language for consistend formulation, added conclusions, added… 

    … data upload tutorial reference
    @lenaarenot
    lenaarenot committed Jun 27, 2024
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Commits on Jun 28, 2024

  1. reformulated rarefaction curve theory

    @lenaarenot
    lenaarenot committed Jun 28, 2024
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  2. eddited paragraph, deleted 'note:' from comments

    @lenaarenot
    lenaarenot committed Jun 28, 2024
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Commits on Jun 29, 2024

  1. apdated zenodo names, plus zenodo link

    @lenaarenot
    lenaarenot committed Jun 29, 2024
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  2. apdated zenodo names, plus zenodo links (manualy)

    @lenaarenot
    lenaarenot committed Jun 29, 2024
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  3. a try to add tools and workflows

    @lenaarenot
    lenaarenot committed Jun 29, 2024
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  4. fixed links

    @lenaarenot
    lenaarenot committed Jun 29, 2024
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Commits on Jul 2, 2024

  1. added section 'uploading biom and creating phyloseq files'

    @lenaarenot
    lenaarenot committed Jul 2, 2024
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Commits on Jul 3, 2024

  1. restructured introduction section

    @lenaarenot
    lenaarenot committed Jul 3, 2024
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  2. forgot a '.'

    @lenaarenot
    lenaarenot committed Jul 3, 2024
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Commits on Jul 4, 2024

  1. added zenodo links and snipets to rarefaction, heatmap and boxplot

    @lenaarenot
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  2. edited zenodo links and added snipets to ordination

    @lenaarenot
    lenaarenot committed Jul 4, 2024
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  3. tried eliminating tool links

    @lenaarenot
    lenaarenot committed Jul 4, 2024
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  4. yaml file problems

    @lenaarenot
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  5. yaml file problems

    @lenaarenot
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  6. yaml file problems

    @lenaarenot
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  7. tried eliminating tool links

    @lenaarenot
    lenaarenot committed Jul 4, 2024
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  8. cosmetic make over

    @lenaarenot
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  9. rarefaction section with sort/long versions

    @lenaarenot
    lenaarenot committed Jul 4, 2024
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Commits on Jul 5, 2024

  1. rest of sections with short/long versions

    @lenaarenot
    lenaarenot committed Jul 5, 2024
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  2. restructure and trying to fix linkage to 'datasets'

    @lenaarenot
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  3. restructure and trying to fix linkage to 'datasets'

    @lenaarenot
    lenaarenot committed Jul 5, 2024
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Commits on Aug 24, 2024

  1. updated text on amplicon backgroud, visualisation tools, ASV vs OTU, … 

    …use case numbering, heatmap tip, new heatmap figures, subsampling and grouping
    @lenaarenot
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  2. use case numbering fix

    @lenaarenot
    lenaarenot committed Aug 24, 2024
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  3. use case numbering fix

    @lenaarenot
    lenaarenot committed Aug 24, 2024
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Commits on Sep 5, 2024

  1. updated text on heatmap, all ordination section, boxplot

    @lenaarenot
    lenaarenot committed Sep 5, 2024
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  2. fixing links

    @lenaarenot
    lenaarenot committed Sep 5, 2024
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  3. fixing links

    @lenaarenot
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Commits on Sep 13, 2024

  1. better heatmap pictures

    @lenaarenot
    lenaarenot committed Sep 13, 2024
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Commits on Sep 19, 2024

  1. restructured use case 2 and 3 with separated tool and workflow

    @lenaarenot
    lenaarenot committed Sep 19, 2024
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  2. fixing small errors

    @lenaarenot
    lenaarenot committed Sep 19, 2024
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Commits on Sep 25, 2024

  1. separated rerafaction section in tools, changed ampvis load and subsa… 

    …mples to tools
    @lenaarenot
    lenaarenot committed Sep 25, 2024
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Commits on Oct 18, 2024

  1. manually took over all correction suggestions and made bullet points … 

    …start with capital letter
    @lenaarenot
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  2. fixing not rendered comment

    @lenaarenot
    lenaarenot committed Oct 18, 2024
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  3. fixing not rendered comment

    @lenaarenot
    lenaarenot committed Oct 18, 2024
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  4. adding lotus2 and merginh mothur tools to 1 bullet point

    @lenaarenot
    lenaarenot committed Oct 18, 2024
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  5. correct comment style

    @lenaarenot
    lenaarenot committed Oct 18, 2024
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  6. bullet points of formats

    @lenaarenot
    lenaarenot committed Oct 18, 2024
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  7. specific zenodo link representation

    @lenaarenot
    lenaarenot committed Oct 18, 2024
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  8. specific zenodo link representation for use case 1

    @lenaarenot
    lenaarenot committed Oct 18, 2024
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  9. specific zenodo link representation for use case 1 v2

    @lenaarenot
    lenaarenot committed Oct 18, 2024
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  10. specific zenodo link representation for use case 1 v3

    @lenaarenot
    lenaarenot committed Oct 18, 2024
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  11. specific zenodo link representation for use case 1 v4

    @lenaarenot
    lenaarenot committed Oct 18, 2024
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  12. made biom and phylosec a subsection

    @lenaarenot
    lenaarenot committed Oct 18, 2024
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  13. rephrasing the part of Kraken and MataPhlAn

    @lenaarenot
    lenaarenot committed Oct 18, 2024
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  14. testing link optics

    @lenaarenot
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  15. bullet points of ploting types with link

    @lenaarenot
    lenaarenot committed Oct 18, 2024
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  16. bullet points of ploting types with link + fixing paragraph look

    @lenaarenot
    lenaarenot committed Oct 18, 2024
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  17. rephrased all 'we' sentances to passive voice

    @lenaarenot
    lenaarenot committed Oct 18, 2024
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Commits on Oct 25, 2024

  1. specific zenodo link representation for use case 1 and 2 v5

    @lenaarenot
    lenaarenot committed Oct 25, 2024
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  2. plot types final links

    @lenaarenot
    lenaarenot committed Oct 25, 2024
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