Paired with StylES commit: Added back multi-filter levels #5
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Tests | |
| on: [push, pull_request] | |
| defaults: | |
| run: | |
| shell: bash | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| standard_tests: | |
| timeout-minutes: 60 | |
| name: ${{ matrix.config.name }} | |
| runs-on: ${{ matrix.config.os }} | |
| env: | |
| BOUT_TEST_TIMEOUT: "6m" | |
| PETSC_DIR: /usr/lib/petscdir/3.7.7/x86_64-linux-gnu-real | |
| PETSC_ARCH: "" | |
| SLEPC_DIR: /usr/lib/slepcdir/3.7.4/x86_64-linux-gnu-real | |
| SLEPC_ARCH: "" | |
| OMP_NUM_THREADS: ${{ matrix.config.omp_num_threads }} | |
| PYTHONPATH: ${{ github.workspace }}/tools/pylib | |
| OMPI_MCA_rmaps_base_oversubscribe: yes | |
| MPIRUN: mpiexec -np | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| # Need this to be able to exclude the coverage job | |
| is_master_or_next: | |
| - ${{ github.ref == 'refs/heads/master' || github.ref == 'refs/heads/next' || github.base_ref == 'master' || github.base_ref == 'next' }} | |
| config: | |
| - name: "Default options, Ubuntu 18.04" | |
| os: ubuntu-18.04 | |
| configure_options: "" | |
| script_flags: "-uim" | |
| - name: "Optimised, shared, Python" | |
| os: ubuntu-18.04 | |
| configure_options: "--enable-shared | |
| --enable-checks=no | |
| --enable-optimize=3 | |
| --disable-signal | |
| --disable-track | |
| --disable-backtrace | |
| --with-petsc | |
| --with-slepc | |
| --with-sundials=/home/runner/local" | |
| script_flags: "-uim -t shared -t python" | |
| - name: "Debug, shared" | |
| os: ubuntu-18.04 | |
| configure_options: "--enable-shared | |
| --enable-sigfpe | |
| --enable-debug | |
| --enable-track | |
| --with-petsc | |
| --with-slepc | |
| --with-sundials=/home/runner/local" | |
| script_flags: "-uim" | |
| - name: "CMake, shared, release, Ubuntu 20.04" | |
| os: ubuntu-20.04 | |
| cmake_options: "-DBUILD_SHARED_LIBS=ON | |
| -DBOUT_ENABLE_OPENMP=ON | |
| -DCMAKE_BUILD_TYPE=Release | |
| -DBOUT_USE_PETSC=ON | |
| -DBOUT_USE_SLEPC=ON | |
| -DBOUT_USE_SUNDIALS=ON | |
| -DBOUT_BUILD_DOCS=OFF | |
| -DSUNDIALS_ROOT=/home/runner/local" | |
| omp_num_threads: 2 | |
| - name: "CMake, shared, OpenMP, Ubuntu 20.04, 3D metrics" | |
| os: ubuntu-20.04 | |
| cmake_options: "-DBUILD_SHARED_LIBS=ON | |
| -DBOUT_ENABLE_METRIC_3D=ON | |
| -DBOUT_ENABLE_OPENMP=ON | |
| -DBOUT_USE_PETSC=ON | |
| -DBOUT_USE_SLEPC=ON | |
| -DBOUT_USE_SUNDIALS=ON | |
| -DBOUT_ENABLE_PYTHON=ON | |
| -DSUNDIALS_ROOT=/home/runner/local" | |
| omp_num_threads: 2 | |
| - name: "Coverage" | |
| os: ubuntu-18.04 | |
| configure_options: "--enable-shared | |
| --enable-code-coverage | |
| --enable-debug | |
| --enable-track | |
| --with-lapack | |
| --with-petsc | |
| --with-slepc | |
| --with-sundials=/home/runner/local" | |
| script_flags: "-u" | |
| exclude: | |
| # Don't run the coverage tests if the branch isn't master or next | |
| - is_master_or_next: false | |
| config: | |
| name: "Coverage" | |
| steps: | |
| - name: Job information | |
| run: | | |
| echo Build: ${{ matrix.config.name }}, ${{ matrix.config.os }} | |
| echo Configure options: ${{ matrix.config.configure_options }} | |
| echo CMake options: ${{ matrix.config.cmake_options }} | |
| - name: Install dependencies | |
| run: sudo apt update && | |
| sudo apt install -y | |
| libfftw3-dev | |
| libnetcdf-dev | |
| libnetcdf-c++4-dev | |
| netcdf-bin | |
| python3 | |
| python3-pip | |
| python3-pytest | |
| python3-numpy | |
| python3-scipy | |
| lcov | |
| openmpi-bin | |
| libopenmpi-dev | |
| petsc-dev | |
| slepc-dev | |
| liblapack-dev | |
| libparpack2-dev | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - name: Install pip packages | |
| run: | | |
| ./.pip_install_for_travis.sh 'cython~=0.29' 'netcdf4~=1.5' 'sympy~=1.5' 'gcovr' 'cmake' 'h5py' zoidberg | |
| # Add the pip install location to the runner's PATH | |
| echo ~/.local/bin >> $GITHUB_PATH | |
| - name: Cache SUNDIALS build | |
| uses: actions/cache@v2 | |
| with: | |
| path: /home/runner/local | |
| key: bout-sundials-${{ matrix.config.os }} | |
| - name: Build SUNDIALS | |
| run: ./.build_sundials_for_travis.sh | |
| - name: Build (configure) | |
| if: ${{ ! contains(matrix.config.name, 'CMake') }} | |
| run: ./.travis_script.sh ${{ matrix.config.script_flags }} | |
| env: | |
| LD_LIBRARY_PATH: /home/runner/local/lib:$LD_LIBRARY_PATH | |
| CONFIGURE_OPTIONS: ${{ matrix.config.configure_options }} | |
| - name: Build (CMake) | |
| if: ${{ contains(matrix.config.name, 'CMake') }} | |
| run: ./.ci_with_cmake.sh ${{ matrix.config.cmake_options }} | |
| - name: Capture coverage | |
| if: ${{ matrix.config.name == 'Coverage' }} | |
| # Explicitly run the coverage capture target, because | |
| # travis_script.sh also does the upload, and we're going to do | |
| # that ourselves in the next step | |
| run: | | |
| # Ensure that there is a corresponding .gcda file for every .gcno file | |
| # This is to try and make the coverage report slightly more accurate | |
| # It still won't include, e.g. any solvers we don't build with though | |
| find . -name "*.gcno" -exec sh -c 'touch -a "${1%.gcno}.gcda"' _ {} \; | |
| make code-coverage-capture | |
| - name: Upload coverage | |
| if: ${{ matrix.config.name == 'Coverage' }} | |
| uses: codecov/codecov-action@v1 | |
| Fedora: | |
| # This is its own job as it doesn't use most of the steps of the | |
| # standard_tests | |
| timeout-minutes: 60 | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - name: Build Fedora rawhide | |
| run: ./.travis_fedora.sh setup mpich rawhide | |
| shell: bash | |
| env: | |
| TRAVIS_BUILD_DIR: ${{ github.workspace }} |