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Bump snakemake from 7.25.0 to 7.30.1 #290

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@dependabot dependabot bot commented on behalf of github Jun 29, 2023

Bumps snakemake from 7.25.0 to 7.30.1.

Release notes

Sourced from snakemake's releases.

v7.30.1

7.30.1 (2023-06-28)

Bug Fixes

v7.30.0

7.30.0 (2023-06-28)

Features

  • allow profiles to be YTE templates; adapt to eido 2.0 (#2325) (67d9ff2)

v7.29.0

7.29.0 (2023-06-21)

Features

  • introduce --workflow-profile for additional workflow specific profiles that overwrite global profiles; add ability to define key-value CLI flags like --set-threads or --set-resources as multi-level dictionaries in profile config yaml files (#2310) (9675c17)

Bug Fixes

v7.28.3

7.28.3 (2023-06-16)

Bug Fixes

  • Detect pandas availability to select serializer (#2300) (e08a771)

Performance Improvements

  • avoid superflous mtime checks when the same file is referred to by multiple jobs (#2284) (eb6e2e1)

Documentation

  • update docs for azbatch and dockerhub ref (#2298) (908dbf1)

v7.28.2

... (truncated)

Changelog

Sourced from snakemake's changelog.

7.30.1 (2023-06-28)

Bug Fixes

7.30.0 (2023-06-28)

Features

  • allow profiles to be YTE templates; adapt to eido 2.0 (#2325) (67d9ff2)

7.29.0 (2023-06-21)

Features

  • introduce --workflow-profile for additional workflow specific profiles that overwrite global profiles; add ability to define key-value CLI flags like --set-threads or --set-resources as multi-level dictionaries in profile config yaml files (#2310) (9675c17)

Bug Fixes

7.28.3 (2023-06-16)

Bug Fixes

  • Detect pandas availability to select serializer (#2300) (e08a771)

Performance Improvements

  • avoid superflous mtime checks when the same file is referred to by multiple jobs (#2284) (eb6e2e1)

Documentation

  • update docs for azbatch and dockerhub ref (#2298) (908dbf1)

7.28.2 (2023-06-13)

Bug Fixes

... (truncated)

Commits
  • abb8410 chore(main): release 7.30.1 (#2332)
  • 49cac6a fix: conda env inside script (#1812)
  • 27da95d chore(main): release 7.30.0 (#2329)
  • 67d9ff2 feat: allow profiles to be YTE templates; adapt to eido 2.0 (#2325)
  • f1b8342 chore(main): release 7.29.0 (#2303)
  • 9b8c362 fix: removed distutils from snakemake (#2312)
  • 9675c17 feat: introduce --workflow-profile for additional workflow specific profiles ...
  • b561bde refactor: more format() and %s replaced by f-strings (#2313)
  • 4c34300 chore: fix conda custom prefix test on windows (#2309)
  • ab58c65 fix: addressing #2197 by allowing 256 character account names in slurm (#2198)
  • Additional commits viewable in compare view

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Bumps [snakemake](https://github.com/snakemake/snakemake) from 7.25.0 to 7.30.1.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](snakemake/snakemake@v7.25.0...v7.30.1)

---
updated-dependencies:
- dependency-name: snakemake
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Jun 29, 2023
@ctb ctb enabled auto-merge (squash) June 30, 2023 17:55
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dependabot bot commented on behalf of github Jul 24, 2023

A newer version of snakemake exists, but since this PR has been edited by someone other than Dependabot I haven't updated it. You'll get a PR for the updated version as normal once this PR is merged.

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