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Dekker Lab

dekker lab

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  1. cworld-dekker cworld-dekker Public

    perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)

    Perl 64 20

  2. crane-nature-2015 crane-nature-2015 Public

    code associated with crane-nature-2015, 10.1038/nature14450

    Perl 34 9

  3. matrix_paper matrix_paper Public

    Scripts and notebooks used in Akgol Oksuz et al. paper

    Jupyter Notebook 11 1

  4. cooltools cooltools Public

    Forked from open2c/cooltools

    The tools for your .cool's

    Python 4 2

  5. cLIMS-docker cLIMS-docker Public

    cLIMS repository running on Docker Contaienrs

    Python 3 4

  6. ALV-repo ALV-repo Public

    Scripts and notebooks for ALV's publication

    Jupyter Notebook 3 1

Repositories

Showing 10 of 38 repositories
  • inherited-folding-programs Public
    dekkerlab/inherited-folding-programs’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 9, 2024
  • cLIMS-docker Public

    cLIMS repository running on Docker Contaienrs

    dekkerlab/cLIMS-docker’s past year of commit activity
    Python 3 LGPL-3.0 4 23 3 Updated Sep 27, 2024
  • Flagship_paper Public
    dekkerlab/Flagship_paper’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 8, 2024
  • Topo-II-Inhibition-Manuscript Public

    Github Repo for Hi-C and MC-3C analysis scripts for the Topo II Inhibition Manuscript

    dekkerlab/Topo-II-Inhibition-Manuscript’s past year of commit activity
    Jupyter Notebook 2 MIT 1 0 0 Updated Feb 3, 2024
  • pita_project Public

    hi-c related analysis for the PITA-project

    dekkerlab/pita_project’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Dec 20, 2023
  • distiller-nf Public Forked from open2c/distiller-nf

    a modular Hi-C mapping pipeline

    dekkerlab/distiller-nf’s past year of commit activity
    Groovy 0 MIT 24 0 1 Updated Jul 12, 2023
  • Single_cell_scripts Public

    Xiangru's scripts and notebooks for single-cell

    dekkerlab/Single_cell_scripts’s past year of commit activity
    Shell 1 0 0 0 Updated Feb 16, 2023
  • Zagelbaum_etal_NSMB_2022 Public

    Notebooks for Hi-C analyses related to "Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization".

    dekkerlab/Zagelbaum_etal_NSMB_2022’s past year of commit activity
    Jupyter Notebook 3 0 1 0 Updated Oct 31, 2022
  • ALV-repo Public

    Scripts and notebooks for ALV's publication

    dekkerlab/ALV-repo’s past year of commit activity
    Jupyter Notebook 3 MIT 1 2 0 Updated Apr 21, 2022
  • chimera-tie-public Public

    a split-read alignment process for mapping multi-chimeric reads

    dekkerlab/chimera-tie-public’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Aug 3, 2021
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