Deployed 3d10334 with MkDocs version: 1.6.0

search/search_index.json

@@ -1 +1 @@
-{"config":{"lang":["en"],"separator":"[\\s\\-]+","pipeline":["stopWordFilter"]},"docs":[{"location":"","title":"CellCanvas","text":"<p>CellCanvas is a tool for building geometric models of cellular architecture from images.</p> <p>CellCanvas combines machine learning with interactive visualization to facilitate the creation of geometric representations of cellular architectures.</p>"},{"location":"#what-can-cellcanvas-do","title":"What can CellCanvas do?","text":"<ul> <li>interactive segmentation when there is no ground truth</li> <li>extract complex geometries</li> </ul>"},{"location":"#modalities","title":"Modalities","text":"<p>CellCanvas currently supports:</p> <ul> <li>CryoET</li> </ul>"},{"location":"quick_start/","title":"Quick Start","text":"<ol> <li> <p>Install album</p> </li> <li> <p>Setup the CellCanvas album catalog: </p> </li> </ol> <pre><code>album add-catalog https://github.com/cellcanvas/album-catalog\n</code></pre> <ol> <li>Browse the catalog.</li> </ol>"},{"location":"tutorials/remote_workflow/","title":"Tutorial: Remote Workflow","text":"<p>Step 1: Follow the quick start</p> <p>Step 2: Install the server on the worker: <code>album install cellcanvas:server:0.0.4</code></p> <p>Step 3: Make a tunnel to the worker: </p> <pre><code>ssh -L 8080:worker-host:8000 user.name@login-host -N -f\nssh -L 2222:login-host:22 user.name@login-host -N -f\n</code></pre> <p>Step 4: Launch the server on the worker: <code>album run cellcanvas:server:0.0.4</code></p> <p>Step 5: Install the config file fetecher on your local machine: <code>album install cellcanvas:fetch-config:0.0.1 --filepath &lt;my_path&gt;</code></p> <p>Step 6: Run the config file fetcher: <code>album run cellcanvas:fetch-config:0.0.1 --localhost localhost --port 8080 --overlay_remote True --static_remote True --filepath ~/Data/copick/cellcanvas_server/local_sshOverlay_sshStatic.json</code></p> <p>Step 7: Install the client on your local machine: <code>album install cellcanvas:napari-cellcanvas:0.0.1</code></p> <p>Step 8: Launch the client on your local machine: <code>album run cellcanvas:napari-cellcanvas:0.0.1 --copick_config_path &lt;my path&gt;</code></p>"}]}
+{"config":{"lang":["en"],"separator":"[\\s\\-]+","pipeline":["stopWordFilter"]},"docs":[{"location":"","title":"CellCanvas","text":"<p>CellCanvas is a tool for building geometric models of cellular architecture from images.</p> <p>CellCanvas combines machine learning with interactive visualization to facilitate the creation of geometric representations of cellular architectures.</p>"},{"location":"#what-can-cellcanvas-do","title":"What can CellCanvas do?","text":"<ul> <li>interactive segmentation when there is no ground truth</li> <li>extract complex geometries</li> </ul>"},{"location":"#modalities","title":"Modalities","text":"<p>CellCanvas currently supports:</p> <ul> <li>CryoET</li> </ul>"},{"location":"quick_start/","title":"Quick Start","text":"<ol> <li> <p>Install album</p> </li> <li> <p>Setup the CellCanvas album catalog: </p> </li> </ol> <pre><code>album add-catalog https://github.com/cellcanvas/album-catalog\n</code></pre> <ol> <li>Browse the catalog.</li> </ol>"},{"location":"tutorials/remote_workflow/","title":"Tutorial: Remote Workflow","text":"<p>Step 1: Follow the quick start</p> <p>Step 2: Install the server on the worker: <code>album install cellcanvas:server:0.0.4</code></p> <p>Step 3: Make a tunnel to the worker: </p> <pre><code>ssh -L 8080:worker-host:8000 user.name@login-host -N -f\nssh -L 2222:login-host:22 user.name@login-host -N -f\n</code></pre> <p>Step 4: Launch the server on the worker: </p> <pre><code>album run cellcanvas:server:0.0.4\n</code></pre> <p>Step 5: Install the config file fetecher on your local machine: </p> <pre><code>album install cellcanvas:fetch-config:0.0.1 --filepath &lt;my_path&gt;\n</code></pre> <p>Step 6: Run the config file fetcher: </p> <pre><code>album run cellcanvas:fetch-config:0.0.1 --localhost localhost --port\n8080 --overlay_remote True --static_remote True --filepath\n~/Data/copick/cellcanvas_server/local_sshOverlay_sshStatic.json\n</code></pre> <p>Step 7: Install the client on your local machine: </p> <pre><code>album install\ncellcanvas:napari-cellcanvas:0.0.1\n</code></pre> <p>Step 8: Launch the client on your local machine: </p> <pre><code>album run cellcanvas:napari-cellcanvas:0.0.1 --copick_config_path &lt;my path&gt;\n</code></pre>"}]}

tutorials/remote_workflow/index.html

@@ -375,14 +375,24 @@ <h1 id="tutorial-remote-workflow">Tutorial: Remote Workflow</h1>
 <pre><code>ssh -L 8080:worker-host:8000 user.name@login-host -N -f
 ssh -L 2222:login-host:22 user.name@login-host -N -f
 </code></pre>
-<p>Step 4: Launch the server on the worker: <code>album run cellcanvas:server:0.0.4</code></p>
-<p>Step 5: Install the config file fetecher on your local machine: <code>album install
-cellcanvas:fetch-config:0.0.1 --filepath &lt;my_path&gt;</code></p>
-<p>Step 6: Run the config file fetcher: <code>album run cellcanvas:fetch-config:0.0.1 --localhost localhost --port 8080 --overlay_remote True --static_remote True --filepath ~/Data/copick/cellcanvas_server/local_sshOverlay_sshStatic.json</code></p>
-<p>Step 7: Install the client on your local machine: <code>album install
-cellcanvas:napari-cellcanvas:0.0.1</code></p>
-<p>Step 8: Launch the client on your local machine: <code>album run
-cellcanvas:napari-cellcanvas:0.0.1 --copick_config_path &lt;my path&gt;</code></p>
+<p>Step 4: Launch the server on the worker: </p>
+<pre><code>album run cellcanvas:server:0.0.4
+</code></pre>
+<p>Step 5: Install the config file fetecher on your local machine: </p>
+<pre><code>album install cellcanvas:fetch-config:0.0.1 --filepath &lt;my_path&gt;
+</code></pre>
+<p>Step 6: Run the config file fetcher: </p>
+<pre><code>album run cellcanvas:fetch-config:0.0.1 --localhost localhost --port
+8080 --overlay_remote True --static_remote True --filepath
+~/Data/copick/cellcanvas_server/local_sshOverlay_sshStatic.json
+</code></pre>
+<p>Step 7: Install the client on your local machine: </p>
+<pre><code>album install
+cellcanvas:napari-cellcanvas:0.0.1
+</code></pre>
+<p>Step 8: Launch the client on your local machine: </p>
+<pre><code>album run cellcanvas:napari-cellcanvas:0.0.1 --copick_config_path &lt;my path&gt;
+</code></pre>