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bg-atlasapi -> brainglobe-atlasapi #169

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merged 4 commits into from
Feb 26, 2024
Merged

bg-atlasapi -> brainglobe-atlasapi #169

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d987b74
bg-atlasapi -> brainglobe-atlasapi
willGraham01 Feb 23, 2024
ce7e89e
Update pyproject.toml
willGraham01 Feb 26, 2024
4253394
Linting pass
willGraham01 Feb 26, 2024
6820a46
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Feb 26, 2024
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3 changes: 2 additions & 1 deletion brainglobe_segmentation/atlas/utils.py
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Original file line number Diff line number Diff line change
Expand Up @@ -36,7 +36,8 @@ def structure_from_viewer(coordinates, atlas_layer, atlas):
Layer, which contains the annotation / region
information for every structure in the (registered)
atlas
atlas : Brainglobe atlas (bg_atlasapi.bg_atlas.BrainGlobeAtlas)
atlas : Brainglobe atlas
(brainglobe_atlasapi.bg_atlas.BrainGlobeAtlas)

Returns
-------
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6 changes: 4 additions & 2 deletions pyproject.toml
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Expand Up @@ -18,7 +18,7 @@ classifiers = [
]
requires-python = ">=3.9"
dependencies = [
"bg-atlasapi",
"brainglobe-atlasapi >=2.0.1",
"brainglobe-napari-io >=0.3.0",
"brainglobe-utils >=0.4.0",
"napari >=0.4.5",
Expand Down Expand Up @@ -80,9 +80,11 @@ line-length = 79
[tool.ruff]
line-length = 79
exclude = ["__init__.py", "build", ".eggs"]
select = ["I", "E", "F"]
fix = true

[tool.ruff.lint]
select = ["I", "E", "F"]

[tool.tox]
legacy_tox_ini = """
# For more information about tox, see https://tox.readthedocs.io/en/latest/
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2 changes: 1 addition & 1 deletion tests/conftest.py
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Expand Up @@ -2,7 +2,7 @@
from pathlib import Path

import pytest
from bg_atlasapi import BrainGlobeAtlas
from brainglobe_atlasapi import BrainGlobeAtlas

from brainglobe_segmentation.segment import SegmentationWidget

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