README:



File Path

tassel_fasta_to_csv.R --args <tassel.fas.txt> <prefix>  -> <prefix.fas.csv>
tassel_hmn_to_tagseq.R --args <tassel.hmn.txt> <prefix.fas.csv> <prefix> -> <prefix.hmnfas.csv>
tassel_filter_hapmap.R --args <prefix.hmnfas.csv> <sample.name.csv> <prefix> -> <prefix.filtered.csv> + graphics
tassel_create_tree.R --args <prefix.filtered.csv> <prefix> -> <prefix.phylogroups.csv> + tree graphics
tassel_create_gps_table.R --args <prefix.filtered.csv> <prefix.phylogroups.csv> <prefix.names.csv> <prefix> -> <prefix.gps.csv>

crosscheck_samples.R --args <prefix.filtered.csv> <prefix>