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- generated with https://bit.ly/cffinit
- authors and order from AUTHORS
- affiliations and ORCID from JOSS paper
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orbeckst committed Sep 11, 2024
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# -*- coding: utf-8 -*-
# This CITATION.cff file was initially generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: alchemlyb
message: >-
If you use this software, please cite it using the
metadata from this file.
type: software
authors:
- email: dotsdl@gmail.com
given-names: David L.
family-names: Dotson
orcid: 'https://orcid.org/0000-0001-5879-2942'
affiliation: Datryllic LLC
- given-names: Ian M.
family-names: Kenney
orcid: 'https://orcid.org/0000-0002-9749-8866'
affiliation: Kenney Consulting, LLC
- given-names: Oliver
family-names: Beckstein
email: obeckste@asu.edu
affiliation: Arizona State University
orcid: 'https://orcid.org/0000-0003-1340-0831'
- given-names: Shuai
family-names: Liu
orcid: 'https://orcid.org/0000-0002-8632-633X'
affiliation: Silicon Therapeutics LLC
- given-names: Travis
family-names: Jensen
- given-names: Bryce
family-names: Allen
orcid: 'https://orcid.org/0000-0002-0804-8127'
affiliation: Differentiated Therapeutics
- given-names: Dominik
family-names: Wille
affiliation: Freie Universität Berlin
- given-names: Victoria
family-names: Lim
orcid: 'https://orcid.org/0000-0003-4030-9312'
affiliation: University of California Irvine
- given-names: Hyungro
family-names: Lee
orcid: 'https://orcid.org/0000-0002-4221-7094'
affiliation: Pacific Northwest National Laboratory
- given-names: Mohammad Soroush
family-names: Barhaghi
orcid: 'https://orcid.org/0000-0001-8226-7347'
affiliation: Wayne State University
- given-names: Zhiyi
family-names: Wu
affiliation: Exscientia plc
orcid: 'https://orcid.org/0000-0002-7615-7851'
email: william@zhiyiwu.me
- given-names: Alexander
family-names: Schlaich
orcid: 'https://orcid.org/0000-0002-4250-363X'
affiliation: University of Stuttgart
- given-names: Jérôme
family-names: Hénin
orcid: 'https://orcid.org/0000-0003-2540-4098'
affiliation: CNRS
- given-names: Thomas T.
family-names: Joseph
orcid: 'https://orcid.org/0000-0003-1323-3244'
affiliation: University of Pennsylvania
- given-names: Irfan
family-names: Alibay
orcid: 'https://orcid.org/0000-0001-5787-9130'
affiliation: Open Molecular Software Foundation
- given-names: Pascal
family-names: Merz
affiliation: PM Scientific Consulting
orcid: 'https://orcid.org/0000-0002-7045-8725'
- given-names: Domenico
family-names: Marson
orcid: 'https://orcid.org/0000-0003-1839-9868'
affiliation: University of Trieste
- given-names: Haoxi
family-names: Li
orcid: 'https://orcid.org/0009-0004-8369-1042'
affiliation: University of California Irvine
identifiers:
- type: swh
value: 'swh:1:dir:4cd266754be413312ee7ef3f1f7fbe05b38192cf'
description: >-
The Software Heritage identifier for the top level
directory of the repository.
repository-code: 'https://github.com/alchemistry/alchemlyb'
url: 'https://alchemlyb.readthedocs.io'
abstract: >-
alchemlyb is an open-source Python software package for
the analysis of alchemical free energy calculations. Its
functionality contains individual composable building
blocks for all aspects of a full typical free energy
analysis workflow, starting with the extraction of raw
data from the output of diverse molecular simulation
packages, moving on to data preprocessing tasks such as
decorrelation of time series, using various estimators to
derive free energy estimates from simulation samples, and
finally providing quality analysis tools for data
convergence checking and visualization. alchemlyb also
contains high-level end-to-end workflows that combine
multiple building blocks into a user-friendly analysis
pipeline from the initial data input stage to the final
results.
keywords:
- Python
- free energy
- molecular dynamics
- alchemistry
license: BSD-3-Clause

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