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SRT2D repository: SRT 2D PET and SPECT algorithms #1420

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SRT2D repository: SRT 2D PET and SPECT algorithms #1420

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Commits on Feb 24, 2016

  1. Initial version of SRT2D for PET

    @Dimitra-Kyriakopoulou
    Dimitra-Kyriakopoulou committed Feb 24, 2016
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  2. BUGFIX in handling 3D data 

    Changes to use initial SSRB and arc-correction
    @KrisThielemans
    KrisThielemans committed Feb 24, 2016
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  3. fix scaling factor and allow xy voxel size change

    @Dimitra-Kyriakopoulou
    Dimitra-Kyriakopoulou committed Feb 24, 2016
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Commits on Mar 29, 2016

  1. zoom

    @Dimitra-Kyriakopoulou
    Dimitra-Kyriakopoulou committed Mar 29, 2016
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  2. PARALLEL

    @Dimitra-Kyriakopoulou
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  3. Input data read as viewgram, instead of as sinogram. Compact form of … 

    …code
    @Dimitra-Kyriakopoulou
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  4. SPECT: PARALLEL - input read as viewgram - attenuation read from file… 

    … - symmetry used
    @Dimitra-Kyriakopoulou
    Dimitra-Kyriakopoulou committed Mar 29, 2016
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Commits on Nov 22, 2016

  1. Revert "SPECT: PARALLEL - input read as viewgram - attenuation read f… 

    …rom file - symmetry used"

This reverts commit b32bb29.
    @Dimitra-Kyriakopoulou
    Dimitra-Kyriakopoulou committed Nov 22, 2016
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Commits on May 4, 2024

  1. Create SRT2DS.cxx

    @Dimitra-Kyriakopoulou
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  2. Update and rename SRT2DS.cxx to SRT2DSPECT.cxx

    @Dimitra-Kyriakopoulou
    Dimitra-Kyriakopoulou authored May 4, 2024
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  3. Update SRT2DSPECT.cxx

    @Dimitra-Kyriakopoulou
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Commits on May 10, 2024

  1. Update SRT2DSPECT.cxx

    @Dimitra-Kyriakopoulou
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  2. Create SRT2DSPECTReconstruction.cxx

    @Dimitra-Kyriakopoulou
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  3. Create SRT2DSPECT

    @Dimitra-Kyriakopoulou
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  4. Update SRT2DSPECT

    @Dimitra-Kyriakopoulou
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  5. Rename SRT2DSPECT to test

    @Dimitra-Kyriakopoulou
    Dimitra-Kyriakopoulou authored May 10, 2024
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  6. Create SRT2DSPECTReconstruction.h

    @Dimitra-Kyriakopoulou
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  7. Update stir_dirs.cmake

    @Dimitra-Kyriakopoulou
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  8. Update SRT2DReconstruction.h

    @Dimitra-Kyriakopoulou
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  9. Update SRT2D.cxx

    @Dimitra-Kyriakopoulou
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  10. Update SRT2DReconstruction.cxx

    @Dimitra-Kyriakopoulou
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  11. Update CMakeLists.txt

    @Dimitra-Kyriakopoulou
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  12. Update CMakeLists.txt

    @Dimitra-Kyriakopoulou
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  13. Create CMakeLists.txt

    @Dimitra-Kyriakopoulou
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  14. Update SRT2DSPECTReconstruction.cxx

    @Dimitra-Kyriakopoulou
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  15. Update SRT2DSPECTReconstruction.cxx

    @Dimitra-Kyriakopoulou
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Commits on May 11, 2024

  1. Update and rename stir_dirs.mk to commented.stir_dirs.txt

    @Dimitra-Kyriakopoulou
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  2. Update SRT2DReconstruction.cxx 

    Corrected the 2 mistakes in the Codacy report
    @Dimitra-Kyriakopoulou
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  3. Update SRT2DSPECTReconstruction.cxx 

    Correction of the 8 (potentially minor) mistakes of the Codacy report
    @Dimitra-Kyriakopoulou
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  4. Update SRT2DReconstruction.cxx 

    Correction of the 2 'reduction of scope of variable' requirements of Codacy at its 2nd run
    @Dimitra-Kyriakopoulou
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  5. Update SRT2DSPECTReconstruction.cxx 

    Corrected the 1 'reduction of scope of variable' requirement of Codacy at its 2nd run
    @Dimitra-Kyriakopoulou
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  6. Update stir_dirs.cmake

    @Dimitra-Kyriakopoulou
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  7. Update stir_dirs.cmake

    @Dimitra-Kyriakopoulou
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  8. Update stir_dirs.cmake

    @Dimitra-Kyriakopoulou
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  9. Merge branch 'master' into SRT2D

    @Dimitra-Kyriakopoulou
    Dimitra-Kyriakopoulou authored May 11, 2024
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  10. Update SRT2DReconstruction.cxx 

    Trying to correct errors in the merging process
    @Dimitra-Kyriakopoulou
    Dimitra-Kyriakopoulou authored May 11, 2024
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  11. Update SRT2DReconstruction.h 

    Trying to correct errors in the merging process
    @Dimitra-Kyriakopoulou
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Commits on May 12, 2024

  1. Update SRT2DSPECTReconstruction.cxx 

    Attempting to correct the merging mistakes
    @Dimitra-Kyriakopoulou
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  2. Update SRT2DReconstruction.cxx 

    Attempting to correct a mistake in the merging process
    @Dimitra-Kyriakopoulou
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  3. Update SRT2DReconstruction.h

    @Dimitra-Kyriakopoulou
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  4. Update SRT2DSPECTReconstruction.h

    @Dimitra-Kyriakopoulou
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  5. Update SRT2DSPECTReconstruction.cxx

    @Dimitra-Kyriakopoulou
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Commits on May 13, 2024

  1. Update SRT2DSPECTReconstruction.cxx 

    Turned to comment a line for choosing which phantom slices would be reconstructed
    @Dimitra-Kyriakopoulou
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Commits on May 14, 2024

  1. Update pre-commit-check.yml 

    trying to correct the pre-commit error
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  2. Update pre-commit-check.yml

    @Dimitra-Kyriakopoulou
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  3. Update pre-commit-check.yml

    @Dimitra-Kyriakopoulou
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  4. Update pre-commit-check.yml

    @Dimitra-Kyriakopoulou
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  5. Update pre-commit-check.yml

    @Dimitra-Kyriakopoulou
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  6. Update pre-commit-check.yml

    @Dimitra-Kyriakopoulou
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  7. Update pre-commit-check.yml

    @Dimitra-Kyriakopoulou
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  8. Merge branch 'UCL:master' into SRT2D

    @Dimitra-Kyriakopoulou
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  9. Update pre-commit-check.yml

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  10. Update pre-commit-check.yml

    @Dimitra-Kyriakopoulou
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  11. Update pre-commit-check.yml

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  12. Update pre-commit-check.yml

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  13. Update pre-commit-check.yml

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Commits on May 15, 2024

  1. Merge branch 'UCL:master' into SRT2D

    @Dimitra-Kyriakopoulou
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  2. Update SRT2DSPECTReconstruction.h 

    Code clean-up
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    Dimitra-Kyriakopoulou authored May 15, 2024
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  3. Update SRT2DSPECTReconstruction.cxx 

    Code clean-up
    @Dimitra-Kyriakopoulou
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  4. Update SRT2DSPECTReconstruction.cxx 

    Code clean-up
    @Dimitra-Kyriakopoulou
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  5. Update SRT2DReconstruction.h 

    Code clean-up
    @Dimitra-Kyriakopoulou
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  6. Update SRT2DReconstruction.cxx 

    Code clean-up
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Commits on May 16, 2024

  1. Delete src/analytic/SRT2D/exe.mk

    @Dimitra-Kyriakopoulou
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  2. Delete src/analytic/SRT2D/lib.mk

    @Dimitra-Kyriakopoulou
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  3. Delete src/include/stir/analytic/test

    @Dimitra-Kyriakopoulou
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  4. Delete src/commented.stir_dirs.txt

    @Dimitra-Kyriakopoulou
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  5. Update SRT2DReconstruction.h 

    Header changed
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  6. Update SRT2DSPECTReconstruction.h 

    Header changed
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  7. Update SRT2DReconstruction.h [ci skip]

    @Dimitra-Kyriakopoulou
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  8. Update SRT2DSPECTReconstruction.h [ci skip]

    @Dimitra-Kyriakopoulou
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  9. Update SRT2D.cxx 

    Header changed
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  10. Update SRT2DSPECT.cxx [ci skip] 

    Header changed
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  11. Update SRT2DReconstruction.h [ci skip] 

    Header changed
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  12. Update SRT2DSPECTReconstruction.h [ci skip] 

    Header changed
    @Dimitra-Kyriakopoulou
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  13. Update SRT2DReconstruction.cxx [ci skip] 

    Header changed, etc.
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  14. Update SRT2DSPECTReconstruction.cxx [ci skip] 

    Changed header, erased line which allowed selection of specific slices from the sinogram of a multi-slice phantom for reconstruction (another such line left is left as comment), etc
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  15. Update pre-commit-check.yml [ci skip] 

    Reverted this file to its original content
    @Dimitra-Kyriakopoulou
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  16. Update SRT2DReconstruction.cxx [ci skip] 

    removed an unnecessary cerr
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  17. Update SRT2D.par [ci skip] 

    added the filter options
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  18. Create SRT2DSPECT.par

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Commits on May 20, 2024

  1. run clang-format

    @Dimitra-Kyriakopoulou @KrisThielemans
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  2. add recon_test_pack test for SRT2D

    @KrisThielemans
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  3. fix SRT2D bug when using arc-correction 

    num_tangential_poss changes, so sp was incorrect
    @KrisThielemans
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  4. Merge pull request #1 from KrisThielemans/SRT2Dfixes 

    SRT2D fixes
    @Dimitra-Kyriakopoulou
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Commits on May 26, 2024

  1. Update SRT2DReconstruction.cxx [ci skip] 

    OPENMP fixed
commenting zoom so that the algorithm passes the test in  run_test_simulate_and_recon.sh
    @Dimitra-Kyriakopoulou
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  2. Update SRT2DReconstruction.h [ci skip] 

    commenting 'zoom' so that the algorithm runs successfully with the test in run_test_simulate_and_recon.sh
    @Dimitra-Kyriakopoulou
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  3. Update SRT2DSPECTReconstruction.cxx 

    OPENMP running
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  4. Merge branch 'master' into SRT2D

    @Dimitra-Kyriakopoulou
    Dimitra-Kyriakopoulou authored May 26, 2024
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Commits on May 27, 2024

  1. Update pre-commit-check.yml [ci skip]

    @Dimitra-Kyriakopoulou
    Dimitra-Kyriakopoulou authored May 27, 2024
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  2. Update SRT2DSPECTReconstruction.cxx 

    Attempt to correct the CI OPENMP error
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    Dimitra-Kyriakopoulou authored May 27, 2024
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Commits on Jul 6, 2024

  1. Update and rename simulate_PET_data_for_tests.sh to simulate_PET_and_… 

    …SPECT_data_for_tests.sh [ci skip]

Changes so that run_test_simulate_and_reckon.sh can run also for SPECT algorithms
Name of file changes accordingly
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    Dimitra-Kyriakopoulou authored Jul 6, 2024
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  2. Update simulate_data.sh [ci skip] 

    Changes so that run_test_simulate_and_reckon.sh can run also for SPECT algorithms
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    Dimitra-Kyriakopoulou authored Jul 6, 2024
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  3. Update run_test_simulate_and_recon.sh [ci skip] 

    Changes for the file to run also for SPECT algorithms
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    Dimitra-Kyriakopoulou authored Jul 6, 2024
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  4. Update SRT2DSPECTReconstruction.cxx [ci skip] 

    Commented out OPENMP, because its image is of lesser quality
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    Dimitra-Kyriakopoulou authored Jul 6, 2024
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  5. Create SPECT_test_Interfile_header.s [ci skip]

    @Dimitra-Kyriakopoulou
    Dimitra-Kyriakopoulou authored Jul 6, 2024
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  6. Create SPECT_test_Interfile_header.sh [ci skip]

    @Dimitra-Kyriakopoulou
    Dimitra-Kyriakopoulou authored Jul 6, 2024
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  7. Update simulate_PET_and_SPECT_data_for_tests.sh [ci skip]

    @Dimitra-Kyriakopoulou
    Dimitra-Kyriakopoulou authored Jul 6, 2024
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  8. Create SRT2DSPECT_test_sim.par [ci skip]

    @Dimitra-Kyriakopoulou
    Dimitra-Kyriakopoulou authored Jul 6, 2024
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  9. Create generate_atten_cylinder_SPECT.par

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    Dimitra-Kyriakopoulou authored Jul 6, 2024
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  10. Rename SPECT_test_Interfile_header.sh to SPECT_test_Interfile_header.… 

    …hs [ci skip]

typo in file name
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    Dimitra-Kyriakopoulou authored Jul 6, 2024
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  11. Update and rename simulate_PET_and_SPECT_data_for_tests.sh to simulat… 

    …e_PET_data_for_tests.sh [ci skip]

Applied Codacy static requested changes
Also changed the file's name to the original, because it created a conflict which prevented Appveyor from running
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    Dimitra-Kyriakopoulou authored Jul 6, 2024
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  12. Update simulate_data.sh 

    Applied changed requested from Codacy static
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    Dimitra-Kyriakopoulou authored Jul 6, 2024
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Commits on Jul 7, 2024

  1. Merge branch 'master' into SRT2D

    @Dimitra-Kyriakopoulou
    Dimitra-Kyriakopoulou authored Jul 7, 2024
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  2. Update build-test.yml [ci skip] 

    Checking if this change can lead to running  
Build and ctest and recon_test_pack CI
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    Dimitra-Kyriakopoulou authored Jul 7, 2024
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  3. Update build-test.yml 

    Checking if this change will run the Build and ctest and recon_test_pack CI tests
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    Dimitra-Kyriakopoulou authored Jul 7, 2024
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  4. Update SRT2DSPECT.cxx

    @Dimitra-Kyriakopoulou
    Dimitra-Kyriakopoulou authored Jul 7, 2024
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  5. Update build-test.yml 

    Reverting the last change to the original file, as the change did not lead to the running of Build and ctest and recon_test_pack CI tests
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    Dimitra-Kyriakopoulou authored Jul 7, 2024
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  6. Update SRT2DSPECT.cxx 

    There is no chage in the file. As only Codacy and not CI test runs after changes in build-test.yml, I had to make a space change here for Appveyor to run for my pull-request after my last build-test.yml change
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    Dimitra-Kyriakopoulou authored Jul 7, 2024
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Commits on Jul 8, 2024

  1. Merge branch 'master' into SRT2D

    @Dimitra-Kyriakopoulou
    Dimitra-Kyriakopoulou authored Jul 8, 2024
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Commits on Jul 14, 2024

  1. Update simulate_PET_data_for_tests.sh[ci skip] 

    I had forgoten the last line: 'fi'
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    Dimitra-Kyriakopoulou authored Jul 14, 2024
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  2. Update run_test_simulate_and_recon.sh 

    I changed a whitespace, so that Appveyor would run
    @Dimitra-Kyriakopoulou
    Dimitra-Kyriakopoulou authored Jul 14, 2024
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Commits on Jul 15, 2024

  1. [ci skip]

    @Dimitra-Kyriakopoulou
    Dimitra-Kyriakopoulou authored Jul 15, 2024
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  2. Update simulate_data.sh 

    corrected name of file, so that it does not include the term 'SPECT' twice
    @Dimitra-Kyriakopoulou
    Dimitra-Kyriakopoulou authored Jul 15, 2024
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Commits on Jul 16, 2024

  1. Update SPECT_test_Interfile_header.hs

    @Dimitra-Kyriakopoulou
    Dimitra-Kyriakopoulou authored Jul 16, 2024
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Commits on Jul 17, 2024

  1. Update simulate_data.sh 

    correction of typo in error message
    @Dimitra-Kyriakopoulou
    Dimitra-Kyriakopoulou authored Jul 17, 2024
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  2. Update SRT2DSPECTReconstruction.cxx 

    removed terminal message
    @Dimitra-Kyriakopoulou
    Dimitra-Kyriakopoulou authored Jul 17, 2024
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