test CCPi Regularisers on SIRF object #587
Workflow file for this run
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| name: run superbuild and test | |
| on: | |
| push: | |
| branches: [ master ] | |
| paths-ignore: | |
| - 'docker/Dockerfile' | |
| - 'docker/*yml' | |
| - '**.md' | |
| - 'jupyterhub/**' | |
| - 'VirtualBox/**' | |
| - '.github/workflows/*docker*' | |
| - 'CITATION.cff' | |
| - '.mailmap' | |
| pull_request: | |
| branches: [ master ] | |
| paths-ignore: | |
| - 'docker/Dockerfile' | |
| - 'docker/*yml' | |
| - '**.md' | |
| - 'jupyterhub/**' | |
| - 'VirtualBox/**' | |
| - '.github/workflows/*docker*' | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| include: | |
| - os: ubuntu-latest | |
| compiler: gcc | |
| compiler_version: 9 | |
| BUILD_TYPE: "Release" | |
| EXTRA_BUILD_FLAGS: "-DUSE_ITK=ON -DBUILD_CIL=ON -DUSE_SYSTEM_ACE=ON -DUSE_SYSTEM_Armadillo=ON -DUSE_SYSTEM_Boost=ON -DUSE_SYSTEM_FFTW3=ON -DUSE_SYSTEM_HDF5=ON -DBUILD_siemens_to_ismrmrd=ON -DUSE_SYSTEM_SWIG=ON" | |
| DEVEL_BUILD: "OFF" | |
| - os: ubuntu-latest | |
| compiler: gcc | |
| compiler_version: 9 | |
| BUILD_TYPE: "Release" | |
| EXTRA_BUILD_FLAGS: "-DUSE_ITK=ON -DBUILD_CIL=ON -DUSE_SYSTEM_ACE=ON -DUSE_SYSTEM_Armadillo=ON -DUSE_SYSTEM_Boost=ON -DUSE_SYSTEM_FFTW3=OFF -DUSE_SYSTEM_HDF5=OFF -DBUILD_siemens_to_ismrmrd=ON -DUSE_SYSTEM_SWIG=OFF" | |
| DEVEL_BUILD: "OFF" | |
| #- os: ubuntu-latest | |
| # compiler: gcc | |
| # compiler_version: 9 | |
| # BUILD_TYPE: "Release" | |
| # EXTRA_BUILD_FLAGS: "-DUSE_ITK=ON -DBUILD_CIL=ON -DUSE_SYSTEM_ACE=ON -DUSE_SYSTEM_Armadillo=ON -DUSE_SYSTEM_Boost=OFF -DUSE_SYSTEM_FFTW3=ON -DUSE_SYSTEM_HDF5=ON -DBUILD_siemens_to_ismrmrd=ON -DUSE_SYSTEM_SWIG=ON" | |
| # DEVEL_BUILD: "OFF" | |
| - os: ubuntu-latest | |
| compiler: gcc | |
| compiler_version: 9 | |
| BUILD_TYPE: "Release" | |
| EXTRA_BUILD_FLAGS: "-DUSE_ITK=ON -DBUILD_CIL=ON -DUSE_SYSTEM_ACE=ON -DUSE_SYSTEM_Armadillo=ON -DUSE_SYSTEM_Boost=ON -DUSE_SYSTEM_FFTW3=ON -DUSE_SYSTEM_HDF5=ON -DBUILD_siemens_to_ismrmrd=ON -DUSE_SYSTEM_SWIG=ON -DUSE_SYSTEM_GTest=OFF" | |
| DEVEL_BUILD: "OFF" | |
| - os: ubuntu-latest | |
| compiler: gcc | |
| compiler_version: 11 | |
| BUILD_TYPE: "Release" | |
| EXTRA_BUILD_FLAGS: "-DUSE_ITK=ON -DBUILD_CIL=ON -DUSE_SYSTEM_ACE=ON -DUSE_SYSTEM_Armadillo=OFF -DUSE_SYSTEM_Boost=ON -DUSE_SYSTEM_FFTW3=ON -DUSE_SYSTEM_HDF5=ON -DBUILD_siemens_to_ismrmrd=ON -DUSE_SYSTEM_SWIG=ON -DUSE_ROOT:BOOL=ON" | |
| DEVEL_BUILD: "ON" | |
| - os: ubuntu-latest | |
| compiler: gcc | |
| compiler_version: 11 | |
| BUILD_TYPE: "Release" | |
| EXTRA_BUILD_FLAGS: "-DUSE_ITK=ON -DBUILD_CIL=ON -DUSE_SYSTEM_ACE=ON -DUSE_SYSTEM_Armadillo=OFF -DUSE_SYSTEM_Boost=ON -DUSE_SYSTEM_FFTW3=ON -DUSE_SYSTEM_HDF5=ON -DBUILD_siemens_to_ismrmrd=ON -DUSE_SYSTEM_SWIG=ON -DUSE_ROOT:BOOL=ON" | |
| DEVEL_BUILD: "OFF" | |
| # let's run all of them, as opposed to aborting when one fails | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: disk space | |
| shell: bash | |
| run: | | |
| case ${{matrix.os}} in | |
| (ubuntu* | macOS*) | |
| sudo .github/workflows/GHA_increase_disk_space.sh | |
| ;; | |
| (windows*) | |
| # no idea what to do here | |
| ;; | |
| esac | |
| - name: install_dependencies | |
| run: | |
| cd docker; | |
| sudo bash raw-ubuntu.sh; | |
| sudo bash build_essential-ubuntu.sh; | |
| sudo bash build_python-ubuntu.sh; | |
| sudo bash build_gadgetron-ubuntu.sh; | |
| sudo bash build_system-ubuntu.sh; | |
| PYTHON_EXECUTABLE=python3 PYTHON_INSTALL_DIR=~/virtualenv bash user_python-ubuntu.sh; | |
| - name: ccache | |
| uses: hendrikmuhs/ccache-action@v1.2 | |
| with: | |
| key: ${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.compiler_version }}-${{ matrix.BUILD_TYPE }} | |
| max-size: "900M" | |
| - name: set_compiler_variables | |
| shell: bash | |
| run: | | |
| set -ex | |
| if test 'XX${{ matrix.compiler }}' = 'XXclang'; then | |
| CC="clang" | |
| CXX="clang++" | |
| elif test 'XX${{ matrix.compiler }}' = 'XXgcc'; then | |
| CC="gcc" | |
| CXX="g++" | |
| fi | |
| if test 'XX${{ matrix.compiler_version }}' != 'XX'; then | |
| CC=${CC}-${{ matrix.compiler_version }} | |
| CXX=${CXX}-${{ matrix.compiler_version }} | |
| sudo apt install -yq ${CXX} ${CC} | |
| fi | |
| export CC CXX | |
| # make available to jobs below | |
| echo CC="$CC" >> $GITHUB_ENV | |
| echo CXX="$CXX" >> $GITHUB_ENV | |
| - name: configure | |
| shell: bash | |
| env: | |
| EXTRA_BUILD_FLAGS: ${{ matrix.EXTRA_BUILD_FLAGS }} | |
| CMAKE_BUILD_TYPE: ${{ matrix.CMAKE_BUILD_TYPE }} | |
| DEVEL_BUILD: "-DDEVEL_BUILD=${{ matrix.DEVEL_BUILD }}" | |
| run: | | |
| set -ex; | |
| export PATH="/usr/lib/ccache:/usr/local/opt/ccache/libexec:$PATH" | |
| export superbuild=`pwd`; | |
| export BUILD_FLAGS="-DCMAKE_BUILD_TYPE=${CMAKE_BUILD_TYPE} -DCMAKE_INSTALL_PREFIX=~/install -DPYVER=3 -DUSE_SYSTEM_RocksDB=OFF -DBUILD_TESTING_Gadgetron:BOOL=ON"; | |
| mkdir -p build/; | |
| cd build; | |
| source ~/virtualenv/bin/activate; | |
| cmake -S ${GITHUB_WORKSPACE} ${BUILD_FLAGS} ${EXTRA_BUILD_FLAGS} ${DEVEL_BUILD}; | |
| - name: build | |
| shell: bash | |
| run: | | |
| cd ${GITHUB_WORKSPACE}/build; | |
| source ~/virtualenv/bin/activate; | |
| cmake --build . -j 2; | |
| # Enable tmate debugging of manually-triggered workflows if the input option was provided | |
| - name: Setup tmate session if triggered | |
| uses: mxschmitt/action-tmate@v3 | |
| timeout-minutes: 15 | |
| if: ${{ github.event_name == 'workflow_dispatch' && github.event.inputs.debug_enabled }} | |
| - name: Upload build log files for debugging | |
| uses: actions/upload-artifact@v3 | |
| if: failure() | |
| with: | |
| name: build_log_files-${{ matrix.os }}-${{ matrix.compiler }}${{ matrix.compiler_version }}-${{ matrix.BUILD_TYPE }}-DEVEL=${{ matrix.DEVEL_BUILD }}-run=${{ github.run_number }}-id=${{ github.run_id }} | |
| path: ${{ github.workspace }}/build/**/*.log | |
| retention-days: 7 | |
| - name: tests | |
| shell: bash | |
| run: | |
| bash docker/ctest_sirf.sh |