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Merge remote-tracking branch 'origin/master' into bio-to-meoh
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fneum committed Aug 8, 2023
2 parents 5ce58f4 + 2148935 commit e4744d3
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12 changes: 7 additions & 5 deletions .github/workflows/ci.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -7,12 +7,14 @@ jobs:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- uses: conda-incubator/setup-miniconda@v2.1.1
- uses: mamba-org/setup-micromamba@v1
with:
python-version: 3.8
environment-file: environment.yaml
activate-environment: technology-data
auto-activate-base: false
micromamba-version: latest
environment-file: environment.yaml
log-level: debug
init-shell: bash
cache-environment: true
cache-downloads: true
- name: Test snakemake workflow
shell: bash -l {0}
run: |
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2 changes: 1 addition & 1 deletion environment.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@ channels:
- conda-forge
- bioconda
dependencies:
- python
- python>=3.9
- pip
- snakemake-minimal
- pandas>=1.1.0,<1.3
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