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added span-3 for imaging #305

added span-3 for imaging

added span-3 for imaging #305

Workflow file for this run

name: Test
on: [push, pull_request]
jobs:
check:
if: github.event_name != 'pull_request' || !contains('OWNER,MEMBER,COLLABORATOR', github.event.pull_request.author_association)
runs-on: ubuntu-latest
name: Check
steps:
- uses: actions/checkout@v3
- uses: actions/setup-python@v4
- name: set PYSHA
run: echo "PYSHA=$(python -VV | sha256sum | cut -d' ' -f1)" >> $GITHUB_ENV
- uses: actions/cache@v3
with:
path: ~/.cache/pre-commit
key: pre-commit|${{ env.PYSHA }}|${{ hashFiles('.pre-commit-config.yaml') }}
- name: dependencies
run: |
pip install -U pre-commit
sudo apt-get install -yqq clang-format
- uses: reviewdog/action-setup@v1
- if: github.event_name == 'push' || github.event_name == 'pull_request'
name: comment
run: |
if [[ $EVENT == pull_request ]]; then
REPORTER=github-pr-review
else
REPORTER=github-check
fi
pre-commit run -a todo | reviewdog -efm="%f:%l: %m" -name=TODO -tee -reporter=$REPORTER -filter-mode nofilter
pre-commit run -a flake8 | reviewdog -f=pep8 -name=flake8 -tee -reporter=$REPORTER -filter-mode nofilter
env:
REVIEWDOG_GITHUB_API_TOKEN: ${{ secrets.GITHUB_TOKEN }}
EVENT: ${{ github.event_name }}
- run: pre-commit run -a --show-diff-on-failure
test:
if: github.event_name != 'pull_request' || !contains('OWNER,MEMBER,COLLABORATOR', github.event.pull_request.author_association)
runs-on: [self-hosted, python, cuda, matlab]
strategy:
matrix:
python: [3.7, '3.10']
name: Test py${{ matrix.python }}
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Run setup-python
run: setup-python -p${{ matrix.python }}
- run: pip install -U --no-binary nimpa -e .[dev]
- run: pytest
- uses: codecov/codecov-action@v1
- name: Post Run setup-python
run: setup-python -p${{ matrix.python }} -Dr
if: ${{ always() }}
deploy:
needs: [check, test]
name: PyPI Deploy
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0
- uses: actions/setup-python@v4
- id: dist
uses: casperdcl/deploy-pypi@v2
with:
requirements: twine setuptools wheel setuptools_scm[toml] ninst scikit-build
build: sdist
gpg_key: ${{ secrets.GPG_KEY }}
password: ${{ secrets.PYPI_TOKEN }}
upload: ${{ github.event_name == 'push' && startsWith(github.ref, 'refs/tags') }}
env:
HMUDIR: ${{ github.workspace }}
- id: meta
name: Changelog
run: |
echo ::set-output name=tag::${GITHUB_REF#refs/tags/}
git log --pretty='format:%d%n- %s%n%b---' $(git tag --sort=v:refname | tail -n2 | head -n1)..HEAD > _CHANGES.md
- if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags')
uses: softprops/action-gh-release@v1
env:
GITHUB_TOKEN: ${{ secrets.GH_TOKEN }}
with:
name: nipet ${{ steps.meta.outputs.tag }} stable
body_path: _CHANGES.md
draft: true
files: |
dist/${{ steps.dist.outputs.targz }}
dist/${{ steps.dist.outputs.targz_asc }}