BUG: Add suffix and outputdir to the JointFusion parameters

Case when inputs are provided via command line is not working
NIRALUser · Aug 27, 2018 · 1e31bb4 · 1e31bb4
1 parent fb4ed77
commit 1e31bb4
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diff --git a/NeosegPipeline/NeosegPipelineTool.cxx b/NeosegPipeline/NeosegPipelineTool.cxx
@@ -16,6 +16,9 @@ NeosegPipelineTool::NeosegPipelineTool(QString programPath)
 void NeosegPipelineTool::setOutput(QString output)
 {
    m_parameters->setOutput(output);
+   if(m_parameters->getAntsJointFusionParameters()){
+      m_parameters->getAntsJointFusionParameters()->setOutputDir(output);
+   }
 }
 
 void NeosegPipelineTool::setPrefix(QString prefix)

diff --git a/NeosegPipeline/Pipeline.cxx b/NeosegPipeline/Pipeline.cxx
@@ -158,6 +158,7 @@ void Pipeline::writeantsJointFusionExecution()
     QString module_name = "AntsJointFusionExecution";
     m_antsJointFusionExecution = new::AntsJointFusionExecution(module_name);
     m_antsJointFusionExecution->setIndent(m_indent);   
+    m_antsJointFusionExecution->setNeo(m_parameters->getNeo());
     //m_atlasPopulationRegistration->setAtlasPopulation(m_parameters->getAtlasPopulation());
     m_antsJointFusionExecution->setAntsJointFusionParameters(m_parameters->getAntsJointFusionParameters());
     //m_antsJointFusionExecution->SetPipelineParameters(m_parameters);