Update for ceci version 2 #139

	# This workflow will install Python dependencies, then perform static linting analysis.
	# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

	name: Lint

	on:
	push:
	branches: [ main ]
	pull_request:
	branches: [ main ]

	jobs:
	build:
	runs-on: ubuntu-latest
	defaults:
	run:
	shell: bash -l {0}
	steps:
	- uses: actions/checkout@v3

	- uses: mamba-org/setup-micromamba@v1
	with:
	create-args: >-
	python=3.11
	channels: conda-forge,defaults
	channel-priority: strict
	show-channel-urls: true
	environment-file: ci-environment.yml
	activate-environment: deepdisc

	- name: Install dependencies
	run: \|
	sudo apt-get update
	python -m pip install --upgrade pip
	pip install .
	pip install .[dev]
	if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
	- name: Analyze code with linter
	run: \|
	pylint -rn -sn --recursive=y ./src
	pylint -rn -sn --recursive=y ./tests
	# the following line allows the CI test to pass, even if pylint fails
	continue-on-error: true

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